RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	NECTIN1	Q15223	517 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CLASRP	Q8N2M8	674 aa	Known RBP	11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CCDC112	Q8NEF3	446 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	DDX11	Q96FC9	970 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	FLT4	P35916	1363 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	IGSF1	Q8N6C5	1336 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ZNF165	P49910	485 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CEBPZ	Q03701	1054 aa	Known RBP	11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NMI	Q13287	307 aa	Predicted RBP	11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PLA2G4D	Q86XP0	818 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	OGFR	Q9NZT2	677 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CTNNA3	Q9UI47	895 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SPATA31D1	Q6ZQQ2	1576 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	USP27X	A6NNY8	438 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	AACS	Q86V21	672 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LEO1	Q8WVC0	666 aa	Predicted RBP	11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ECHDC1	Q9NTX5	307 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	MAP3K5	Q99683	1374 aa		11.33	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SLC27A2	O14975	620 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	DNAAF4	Q8WXU2	420 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TM6SF1	Q9BZW5	370 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CLSTN2	Q9H4D0	955 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SBNO1	A3KN83	1393 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	USP31	Q70CQ4	1352 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LMTK3	Q96Q04	1460 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TTC41P	Q6P2S7	1318 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TTC21A	Q8NDW8	1320 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KCNQ3	O43525	872 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	BEND3	Q5T5X7	828 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NGDN	Q8NEJ9	315 aa	Known RBP	11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FBXW7	Q969H0	707 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PGBD1	Q96JS3	809 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FEZ1	Q99689	392 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FMN2	Q9NZ56	1722 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KDR	P35968	1356 aa		11.32	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PLEKHG3	A1L390	1219 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	JAK2	O60674	1132 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CEP135	Q66GS9	1140 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TRMT1	Q9NXH9	659 aa	Known RBP	11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PPP6R1	Q9UPN7	881 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	BLOC1S2	Q6QNY1	142 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TDRD7	Q8NHU6	1098 aa	Known RBP	11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ELP1	O95163	1332 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PXDNL	A1KZ92	1463 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594		A0A0D9SFI3	127 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NPHP1	O15259	732 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	HSP90AB4P	Q58FF6	505 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	BOLA2	Q9H3K6	86 aa		11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	DDX19A	Q9NUU7	478 aa	Known RBP	11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CGN	Q9P2M7	1197 aa	Known RBP	11.31	□□□□□ -0.6
PPP4R1-222	ENST00000582594	HTATSF1	O43719	755 aa	Known RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PDC	P20941	246 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NLRP6	P59044	892 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	EVI5L	Q96CN4	794 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NPHP3	Q7Z494	1330 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CACNA1F	O60840	1977 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TOB2	Q14106	344 aa	Predicted RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FILIP1	Q7Z7B0	1213 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KCNB2	Q92953	911 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	GPATCH3	Q96I76	525 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LGR6	Q9HBX8	967 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TLR7	Q9NYK1	1049 aa	Known RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	NALCN	Q8IZF0	1738 aa		11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	USP42	Q9H9J4	1324 aa	Known RBP	11.3	□□□□□ -0.6
PPP4R1-222	ENST00000582594	GOLGA6L19	H0YKK7	550 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PSMA5	P28066	241 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	MAP4K1	Q92918	833 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FSD1	Q9BTV5	496 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SIL1	Q9H173	461 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	DDX41	Q9UJV9	622 aa	Known RBP	11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PAXBP1	Q9Y5B6	917 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KDM4F	A0A1W2PPD8	638 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PPFIA3	O75145	1194 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	RPS6KB1	P23443	525 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	CWF19L2	Q2TBE0	894 aa	Known RBP	11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ERCC4	Q92889	916 aa	Predicted RBP	11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	EDC3	Q96F86	508 aa	Known RBP	11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SLC26A8	Q96RN1	970 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ZNF215	Q9UL58	517 aa	Predicted RBP	11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	USP16	Q9Y5T5	823 aa		11.29	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LRRC8A	Q8IWT6	810 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	BRF1	Q92994	677 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SIRT1	Q96EB6	747 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	HSP90B1	P14625	803 aa	Known RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	HOXC9	P31274	260 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KIF18A	Q8NI77	898 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SYTL4	Q96C24	671 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LRRC2	Q9BYS8	371 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	TECPR2	O15040	1411 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594		H3BQV1	296 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms