RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GSCP56915 257 aaPredicted RBP12.82□□□□□ -0.36
CLK3-226ENST00000569406 SYCP1Q15431 976 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 KIAA1524Q8TCG1 905 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 ATP10DQ9P241 1426 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 TWISTNBQ3B726 338 aaPredicted RBP12.81□□□□□ -0.36
CLK3-226ENST00000569406 FOXD4L5Q5VV16 416 aaPredicted RBP12.81□□□□□ -0.36
CLK3-226ENST00000569406 FOXD4L4Q8WXT5 416 aaPredicted RBP12.81□□□□□ -0.36
CLK3-226ENST00000569406 SMTNL1A8MU46 457 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 FOXO3O43524 673 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 CAND2O75155 1236 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 KCNA6P17658 529 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 MAP9Q49MG5 647 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 ARMCX6Q7L4S7 300 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 JMYQ8N9B5 988 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 NEBLO76041 1014 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 ST5P78524 1137 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 MCM10Q7L590 875 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 ATG3Q9NT62 314 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 LTN1O94822 1766 aa12.81□□□□□ -0.36
CLK3-226ENST00000569406 ARHGEF10O15013 1369 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 NAIF1Q69YI7 327 aaPredicted RBP12.8□□□□□ -0.36
CLK3-226ENST00000569406 GAS2L2Q8NHY3 880 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 ITFG2Q969R8 447 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 CHAMP1Q96JM3 812 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 C1orf115Q9H7X2 142 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 LIG1P18858 919 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 MNAT1P51948 309 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 ELF2Q15723 593 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 SMARCE1Q969G3 411 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 KIF1BPQ96EK5 621 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 ANKARQ7Z5J8 1434 aa12.8□□□□□ -0.36
CLK3-226ENST00000569406 FAM208AQ9UK61 1670 aaKnown RBP12.79□□□□□ -0.36
CLK3-226ENST00000569406 IGSF1Q8N6C5 1336 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 CASC1Q6TDU7 716 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 SNX21Q969T3 373 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 NSFL1CQ9UNZ2 370 aaKnown RBP12.79□□□□□ -0.36
CLK3-226ENST00000569406 SBNO1A3KN83 1393 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 TTC21AQ8NDW8 1320 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 NCOA3Q9Y6Q9 1424 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 ANKRD65E5RJM6 399 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 TMEM132AQ24JP5 1023 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 NFAT5O94916 1531 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 TUBGCP6Q96RT7 1819 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 RGPD2P0DJD1 1756 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 K7ELQ4 463 aaPredicted RBP12.79□□□□□ -0.36
CLK3-226ENST00000569406 CD2BP2O95400 341 aaKnown RBP12.79□□□□□ -0.36
CLK3-226ENST00000569406 MAGEA9P43362 315 aa12.79□□□□□ -0.36
CLK3-226ENST00000569406 ZC3H12AQ5D1E8 599 aaKnown RBP12.79□□□□□ -0.36
CLK3-226ENST00000569406 N4BP2Q86UW6 1770 aaPredicted RBP12.78□□□□□ -0.36
CLK3-226ENST00000569406 HTATSF1O43719 755 aaKnown RBP12.78□□□□□ -0.36
CLK3-226ENST00000569406 ADAMTSL3P82987 1691 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 TPM4P67936 248 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 CCT2P78371 535 aaKnown RBP12.78□□□□□ -0.36
CLK3-226ENST00000569406 MTHFSDQ2M296 383 aaKnown RBP12.78□□□□□ -0.36
CLK3-226ENST00000569406 PAIP2Q9BPZ3 127 aaKnown RBP12.78□□□□□ -0.36
CLK3-226ENST00000569406 KIAA0232Q92628 1395 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 KLHL33A6NCF5 533 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 TPM3P06753 285 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 DNAAF4Q8WXU2 420 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 EYA1Q99502 592 aa12.78□□□□□ -0.36
CLK3-226ENST00000569406 PHRF1Q9P1Y6 1649 aaKnown RBP12.77□□□□□ -0.36
CLK3-226ENST00000569406 FLT4P35916 1363 aa12.77□□□□□ -0.37
CLK3-226ENST00000569406 CCDC196A0A1B0GTZ2 297 aa12.77□□□□□ -0.37
CLK3-226ENST00000569406 LNPKQ9C0E8 428 aa12.77□□□□□ -0.37
CLK3-226ENST00000569406 NUCKS1Q9H1E3 243 aaKnown RBP12.77□□□□□ -0.37
CLK3-226ENST00000569406 ZNF215Q9UL58 517 aaPredicted RBP12.77□□□□□ -0.37
CLK3-226ENST00000569406 LMAN1P49257 510 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 EID1Q9Y6B2 187 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 CHD1LQ86WJ1 897 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 RBM42Q9BTD8 480 aaKnown RBP12.76□□□□□ -0.37
CLK3-226ENST00000569406 BSDC1Q9NW68 430 aaPredicted RBP12.76□□□□□ -0.37
CLK3-226ENST00000569406 NUCB2P80303 420 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 PKP1Q13835 747 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 INTS3Q68E01 1043 aaKnown RBP12.76□□□□□ -0.37
CLK3-226ENST00000569406 KIF2CQ99661 725 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 KIF24Q5T7B8 1368 aa12.76□□□□□ -0.37
CLK3-226ENST00000569406 KIF3CO14782 793 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 IPO7O95373 1038 aaKnown RBP12.75□□□□□ -0.37
CLK3-226ENST00000569406 ZCCHC17Q9NP64 241 aaKnown RBP12.75□□□□□ -0.37
CLK3-226ENST00000569406 TPM1P09493 284 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 SWT1Q5T5J6 900 aaKnown RBP12.75□□□□□ -0.37
CLK3-226ENST00000569406 MMS22LQ6ZRQ5 1243 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 THEMISQ8N1K5 641 aaPredicted RBP12.75□□□□□ -0.37
CLK3-226ENST00000569406 FBXO18Q8NFZ0 1043 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 GIMAP7Q8NHV1 300 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 PPM1EQ8WY54 764 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 EXOC6BQ9Y2D4 811 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 MED1Q15648 1581 aaPredicted RBP12.75□□□□□ -0.37
CLK3-226ENST00000569406 MIS18AQ9NYP9 233 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 MSH6P52701 1360 aa12.75□□□□□ -0.37
CLK3-226ENST00000569406 NUTM2GQ5VZR2 741 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 NBPF3Q9H094 633 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 TRDNQ13061 729 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 KCNF1Q9H3M0 494 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 FAM53CQ9NYF3 392 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 EIF3CLB5ME19 914 aaKnown RBP12.74□□□□□ -0.37
CLK3-226ENST00000569406 TPD52L1Q16890 204 aaPredicted RBP12.74□□□□□ -0.37
CLK3-226ENST00000569406 GOLGA5Q8TBA6 731 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 EIF3CQ99613 913 aaKnown RBP12.74□□□□□ -0.37
CLK3-226ENST00000569406 RPS6KL1Q9Y6S9 549 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms