RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 API5Q9BZZ5 524 aaKnown RBP27.56■■■□□ 2
SNX1-206ENST00000559389 NEURL1BA8MQ27 555 aa27.55■■■□□ 2
SNX1-206ENST00000559389 BEND3Q5T5X7 828 aa27.55■■■□□ 2
SNX1-206ENST00000559389 TPTE2Q6XPS3 522 aa27.55■■■□□ 2
SNX1-206ENST00000559389 UTP14AQ9BVJ6 771 aaKnown RBP27.55■■■□□ 2
SNX1-206ENST00000559389 FHDC1Q9C0D6 1143 aaPredicted RBP27.55■■■□□ 2
SNX1-206ENST00000559389 COL11A2P13942 1736 aaPredicted RBP27.54■■■□□ 2
SNX1-206ENST00000559389 ST5P78524 1137 aa27.54■■■□□ 2
SNX1-206ENST00000559389 CWF19L2Q2TBE0 894 aaKnown RBP27.54■■■□□ 2
SNX1-206ENST00000559389 CWC25Q9NXE8 425 aaPredicted RBP27.54■■■□□ 2
SNX1-206ENST00000559389 CD2APQ9Y5K6 639 aa27.54■■■□□ 2
SNX1-206ENST00000559389 DDX60Q8IY21 1712 aaKnown RBP27.53■■■□□ 2
SNX1-206ENST00000559389 NPHP1O15259 732 aa27.53■■■□□ 2
SNX1-206ENST00000559389 NUTM1Q86Y26 1132 aa27.53■■■□□ 2
SNX1-206ENST00000559389 KLHL34Q8N239 644 aa27.53■■■□□ 2
SNX1-206ENST00000559389 FRAT1Q92837 279 aaPredicted RBP27.53■■■□□ 2
SNX1-206ENST00000559389 DLEC1Q9Y238 1755 aa27.53■■■□□ 2
SNX1-206ENST00000559389 ABCC4O15439 1325 aa27.52■■■□□ 2
SNX1-206ENST00000559389 IPO8O15397 1037 aaKnown RBP27.52■■■□□ 2
SNX1-206ENST00000559389 SLC4A10Q6U841 1118 aa27.52■■■□□ 2
SNX1-206ENST00000559389 CCDC24Q8N4L8 307 aa27.52■■■□□ 2
SNX1-206ENST00000559389 SH3TC1Q8TE82 1336 aa27.51■■□□□ 1.99
SNX1-206ENST00000559389 TRIM27P14373 513 aa27.51■■□□□ 1.99
SNX1-206ENST00000559389 ERFEQ4G0M1 354 aa27.51■■□□□ 1.99
SNX1-206ENST00000559389 ATF7IPQ6VMQ6 1270 aa27.51■■□□□ 1.99
SNX1-206ENST00000559389 TRMT112Q9UI30 125 aaKnown RBP27.51■■□□□ 1.99
SNX1-206ENST00000559389 GTF2E1P29083 439 aaPredicted RBP27.5■■□□□ 1.99
SNX1-206ENST00000559389 ZKSCAN2Q63HK3 967 aa27.5■■□□□ 1.99
SNX1-206ENST00000559389 ALDH1L1O75891 902 aa27.49■■□□□ 1.99
SNX1-206ENST00000559389 GCKRQ14397 625 aa27.49■■□□□ 1.99
SNX1-206ENST00000559389 ZBTB38Q8NAP3 1195 aaPredicted RBP27.49■■□□□ 1.99
SNX1-206ENST00000559389 BRIP1Q9BX63 1249 aa27.49■■□□□ 1.99
SNX1-206ENST00000559389 SRCIN1Q9C0H9 1055 aa27.49■■□□□ 1.99
SNX1-206ENST00000559389 PCCAP05165 728 aaPredicted RBP27.48■■□□□ 1.99
SNX1-206ENST00000559389 SYT17Q9BSW7 474 aa27.48■■□□□ 1.99
SNX1-206ENST00000559389 NLGN2Q8NFZ4 835 aa27.47■■□□□ 1.99
SNX1-206ENST00000559389 FAM89AQ96GI7 184 aa27.47■■□□□ 1.99
SNX1-206ENST00000559389 TNNQ9UQP3 1299 aa27.47■■□□□ 1.99
SNX1-206ENST00000559389 SYNE4Q8N205 404 aa27.46■■□□□ 1.99
SNX1-206ENST00000559389 BRCA1P38398 1863 aaKnown RBP27.46■■□□□ 1.99
SNX1-206ENST00000559389 CCT4P50991 539 aaKnown RBP27.45■■□□□ 1.98
SNX1-206ENST00000559389 TGFB2P61812 414 aa27.45■■□□□ 1.98
SNX1-206ENST00000559389 SLC10A5Q5PT55 438 aa27.45■■□□□ 1.98
SNX1-206ENST00000559389 CDHR2Q9BYE9 1310 aa27.44■■□□□ 1.98
SNX1-206ENST00000559389 PDE6BP35913 854 aa27.44■■□□□ 1.98
SNX1-206ENST00000559389 KLRG2A4D1S0 409 aaPredicted RBP27.43■■□□□ 1.98
SNX1-206ENST00000559389 RTL5Q5HYW3 569 aaPredicted RBP27.43■■□□□ 1.98
SNX1-206ENST00000559389 UBE3BQ7Z3V4 1068 aa27.43■■□□□ 1.98
SNX1-206ENST00000559389 H7C1W4 665 aa27.42■■□□□ 1.98
SNX1-206ENST00000559389 CASP7P55210 303 aa27.42■■□□□ 1.98
SNX1-206ENST00000559389 INTS3Q68E01 1043 aaKnown RBP27.42■■□□□ 1.98
SNX1-206ENST00000559389 CLUAP1Q96AJ1 413 aa27.42■■□□□ 1.98
SNX1-206ENST00000559389 GRM8O00222 908 aa27.41■■□□□ 1.98
SNX1-206ENST00000559389 IRS4O14654 1257 aaPredicted RBP27.41■■□□□ 1.98
SNX1-206ENST00000559389 HCLS1P14317 486 aaPredicted RBP27.41■■□□□ 1.98
SNX1-206ENST00000559389 DPEP1P16444 411 aa27.41■■□□□ 1.98
SNX1-206ENST00000559389 CHRNA5P30532 468 aa27.41■■□□□ 1.98
SNX1-206ENST00000559389 CRY2Q49AN0 593 aa27.41■■□□□ 1.98
SNX1-206ENST00000559389 JARID2Q92833 1246 aaPredicted RBP27.41■■□□□ 1.98
SNX1-206ENST00000559389 PDZRN3Q9UPQ7 1066 aa27.41■■□□□ 1.98
SNX1-206ENST00000559389 C3orf67Q6ZVT6 689 aa27.4■■□□□ 1.98
SNX1-206ENST00000559389 C2CD5Q86YS7 1000 aa27.4■■□□□ 1.98
SNX1-206ENST00000559389 DZIP1LQ8IYY4 767 aaKnown RBP27.4■■□□□ 1.98
SNX1-206ENST00000559389 UTYO14607 1347 aa27.4■■□□□ 1.98
SNX1-206ENST00000559389 MYH3P11055 1940 aa27.39■■□□□ 1.98
SNX1-206ENST00000559389 FTSJ3Q8IY81 847 aaKnown RBP27.39■■□□□ 1.98
SNX1-206ENST00000559389 A0A0G2JLW4 131 aa27.38■■□□□ 1.97
SNX1-206ENST00000559389 SRGNP10124 158 aa27.38■■□□□ 1.97
SNX1-206ENST00000559389 RLBP1P12271 317 aa27.38■■□□□ 1.97
SNX1-206ENST00000559389 KCNA3P22001 575 aa27.38■■□□□ 1.97
SNX1-206ENST00000559389 NLRP3Q96P20 1036 aa27.38■■□□□ 1.97
SNX1-206ENST00000559389 H0YIN7 160 aa27.37■■□□□ 1.97
SNX1-206ENST00000559389 HSP90B1P14625 803 aaKnown RBP27.37■■□□□ 1.97
SNX1-206ENST00000559389 TMEM57Q8N5G2 664 aa27.37■■□□□ 1.97
SNX1-206ENST00000559389 C9orf78Q9NZ63 289 aaPredicted RBP27.37■■□□□ 1.97
SNX1-206ENST00000559389 PLIN1O60240 522 aa27.36■■□□□ 1.97
SNX1-206ENST00000559389 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.36■■□□□ 1.97
SNX1-206ENST00000559389 PLA2G12BQ9BX93 195 aa27.36■■□□□ 1.97
SNX1-206ENST00000559389 PDE8AO60658 829 aa27.35■■□□□ 1.97
SNX1-206ENST00000559389 STYK1Q6J9G0 422 aa27.35■■□□□ 1.97
SNX1-206ENST00000559389 USP44Q9H0E7 712 aa27.35■■□□□ 1.97
SNX1-206ENST00000559389 CACNA1SQ13698 1873 aa27.34■■□□□ 1.97
SNX1-206ENST00000559389 NBPF7P0C2Y1 421 aaPredicted RBP27.34■■□□□ 1.97
SNX1-206ENST00000559389 MS4A1P11836 297 aa27.34■■□□□ 1.97
SNX1-206ENST00000559389 NPR1P16066 1061 aa27.34■■□□□ 1.97
SNX1-206ENST00000559389 MASTLQ96GX5 879 aa27.34■■□□□ 1.97
SNX1-206ENST00000559389 RRP1P56182 461 aaKnown RBP27.33■■□□□ 1.97
SNX1-206ENST00000559389 CTSWP56202 376 aa27.33■■□□□ 1.97
SNX1-206ENST00000559389 SF3B3Q15393 1217 aaKnown RBP27.33■■□□□ 1.97
SNX1-206ENST00000559389 PANK1Q8TE04 598 aa27.33■■□□□ 1.97
SNX1-206ENST00000559389 RPGRQ92834 1020 aaKnown RBP27.33■■□□□ 1.97
SNX1-206ENST00000559389 HOXA10P31260 410 aaPredicted RBP27.32■■□□□ 1.96
SNX1-206ENST00000559389 ARFGEF1Q9Y6D6 1849 aa27.32■■□□□ 1.96
SNX1-206ENST00000559389 SUCLG2Q96I99 432 aa27.31■■□□□ 1.96
SNX1-206ENST00000559389 MEIS3Q99687 375 aa27.31■■□□□ 1.96
SNX1-206ENST00000559389 PIM2Q9P1W9 311 aa27.31■■□□□ 1.96
SNX1-206ENST00000559389 COL4A1P02462 1669 aa27.3■■□□□ 1.96
SNX1-206ENST00000559389 ITPRIPQ8IWB1 547 aa27.3■■□□□ 1.96
SNX1-206ENST00000559389 ZNF622Q969S3 477 aaKnown RBP eCLIP27.3■■□□□ 1.961e-9■□□□□ 9.2
SNX1-206ENST00000559389 RTL9Q8NET4 1388 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms