RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ZNF784Q8NCA9 323 aaPredicted RBP5.65□□□□□ -1.5
CD44-226ENST00000527889 YTHDC1Q96MU7 727 aaKnown RBP5.65□□□□□ -1.5
CD44-226ENST00000527889 BCL11AQ9H165 835 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 FMN2Q9NZ56 1722 aa5.65□□□□□ -1.51
CD44-226ENST00000527889 ADAMTS13Q76LX8 1427 aa5.65□□□□□ -1.51
CD44-226ENST00000527889 USP32Q8NFA0 1604 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 LZTS3O60299 673 aaPredicted RBP5.64□□□□□ -1.51
CD44-226ENST00000527889 ATP2B4P23634 1241 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 SLC19A1P41440 591 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 PTPRNQ16849 979 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 SLFNL1Q499Z3 407 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 PTCRAQ6ISU1 281 aaPredicted RBP5.64□□□□□ -1.51
CD44-226ENST00000527889 PLPP7Q8NBV4 271 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.64□□□□□ -1.51
CD44-226ENST00000527889 OCSTAMPQ9BR26 566 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 GPSM3Q9Y4H4 160 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 VIRMAQ69YN4 1812 aaKnown RBP5.64□□□□□ -1.51
CD44-226ENST00000527889 METP08581 1390 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 LRPPRCP42704 1394 aaKnown RBP5.64□□□□□ -1.51
CD44-226ENST00000527889 PLEKHG1Q9ULL1 1385 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 SBNO2Q9Y2G9 1366 aa5.64□□□□□ -1.51
CD44-226ENST00000527889 ZNF16P17020 682 aaPredicted RBP5.63□□□□□ -1.51
CD44-226ENST00000527889 PRELPP51888 382 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 DPYDQ12882 1025 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 SWI5Q1ZZU3 235 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 RNF135Q8IUD6 432 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 ZNF592Q92610 1267 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 MRRFQ96E11 262 aaKnown RBP5.63□□□□□ -1.51
CD44-226ENST00000527889 SIRT1Q96EB6 747 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 NUDT12Q9BQG2 462 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 V9GY48 417 aaPredicted RBP5.63□□□□□ -1.51
CD44-226ENST00000527889 PLEKHH1Q9ULM0 1364 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 MED14O60244 1454 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 LRRC7Q96NW7 1537 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 ADGRB2O60241 1585 aa5.63□□□□□ -1.51
CD44-226ENST00000527889 DLG5Q8TDM6 1919 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 SCNN1AP37088 669 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 MARSP56192 900 aaKnown RBP5.62□□□□□ -1.51
CD44-226ENST00000527889 MCCD1P59942 119 aaPredicted RBP5.62□□□□□ -1.51
CD44-226ENST00000527889 CLDN10P78369 228 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 PTK2Q05397 1052 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 KCNH2Q12809 1159 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 SPRYD7Q5W111 196 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 PDXDC2PQ6P474 469 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 TRAF7Q6Q0C0 670 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 TRIM67Q6ZTA4 783 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 THEMISQ8N1K5 641 aaPredicted RBP5.62□□□□□ -1.51
CD44-226ENST00000527889 CCDC24Q8N4L8 307 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 OGFOD1Q8N543 542 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 C1orf216Q8TAB5 229 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 PRAM1Q96QH2 718 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 PANK3Q9H999 370 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 POGKQ9P215 609 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 EID1Q9Y6B2 187 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 PTPRUQ92729 1446 aa5.62□□□□□ -1.51
CD44-226ENST00000527889 TECPR2O15040 1411 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 DKK1O94907 266 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 CCNYL3P0C7X3 344 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 RXRBP28702 533 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 CTHP32929 405 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 SHPRHQ149N8 1683 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 MAP7D1Q3KQU3 841 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 CCDC184Q52MB2 194 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 WAPLQ7Z5K2 1190 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 GPKOWQ92917 476 aaPredicted RBP eCLIP5.61□□□□□ -1.51
CD44-226ENST00000527889 SLC26A8Q96RN1 970 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 BCL2L13Q9BXK5 485 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 PRKRIP1Q9H875 184 aaPredicted RBP5.61□□□□□ -1.51
CD44-226ENST00000527889 USP35Q9P2H5 1018 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 MARF1Q9Y4F3 1742 aaKnown RBP5.61□□□□□ -1.51
CD44-226ENST00000527889 PCDHB9Q9Y5E1 797 aa5.61□□□□□ -1.51
CD44-226ENST00000527889 LTN1O94822 1766 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 RGPD5Q99666 1765 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 NRKQ7Z2Y5 1582 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 ABCC11Q96J66 1382 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 ROBO2Q9HCK4 1378 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 EVC2Q86UK5 1308 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 CCER2I3L3R5 266 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 RPIAP49247 311 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 TRIM32Q13049 653 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 EML3Q32P44 896 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 TSGA10IPQ3SY00 556 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 CC2D1BQ5T0F9 858 aaKnown RBP5.6□□□□□ -1.51
CD44-226ENST00000527889 NPAS4Q8IUM7 802 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 TMC1Q8TDI8 760 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 ZNF594Q96JF6 807 aaPredicted RBP5.6□□□□□ -1.51
CD44-226ENST00000527889 EVA1BQ9NVM1 165 aa5.6□□□□□ -1.51
CD44-226ENST00000527889 DNAAF2Q9NVR5 837 aaKnown RBP5.6□□□□□ -1.51
CD44-226ENST00000527889 NWD1Q149M9 1564 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 CDC42BPGQ6DT37 1551 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 FAM135BQ49AJ0 1406 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 KTN1Q86UP2 1357 aaKnown RBP5.59□□□□□ -1.51
CD44-226ENST00000527889 ANKRD33BA6NCL7 494 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 ZBTB7BO15156 539 aaPredicted RBP5.59□□□□□ -1.51
CD44-226ENST00000527889 SKOR1P84550 965 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 ZNF697Q5TEC3 545 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 ZNF598Q86UK7 904 aaKnown RBP5.59□□□□□ -1.51
CD44-226ENST00000527889 TRIM50Q86XT4 487 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 LARGE2Q8N3Y3 721 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 ARMC2Q8NEN0 867 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms