RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 NTSR2O95665 410 aa21.55■■□□□ 1.04
COL7A1-202ENST00000422991 SERPINB2P05120 415 aa21.55■■□□□ 1.04
COL7A1-202ENST00000422991 SUSD4Q5VX71 490 aa21.55■■□□□ 1.04
COL7A1-202ENST00000422991 NBPF5PQ86XG9 351 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-202ENST00000422991 ANKRD31Q8N7Z5 1873 aa21.55■■□□□ 1.04
COL7A1-202ENST00000422991 C10orf71Q711Q0 1435 aa21.55■■□□□ 1.04
COL7A1-202ENST00000422991 CWC25Q9NXE8 425 aaPredicted RBP21.54■■□□□ 1.04
COL7A1-202ENST00000422991 DDX60Q8IY21 1712 aaKnown RBP21.54■■□□□ 1.04
COL7A1-202ENST00000422991 RNF123Q5XPI4 1314 aa21.54■■□□□ 1.04
COL7A1-202ENST00000422991 FAM177BA6PVY3 158 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 PLIN1O60240 522 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 ALDH1L1O75891 902 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 PPP1R42Q7Z4L9 355 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 CNBD1Q8NA66 436 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 SRCIN1Q9C0H9 1055 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 NYXQ9GZU5 481 aa21.53■■□□□ 1.04
COL7A1-202ENST00000422991 TNRC6CQ9HCJ0 1690 aaKnown RBP21.53■■□□□ 1.04
COL7A1-202ENST00000422991 CCT4P50991 539 aaKnown RBP21.52■■□□□ 1.04
COL7A1-202ENST00000422991 GCKRQ14397 625 aa21.52■■□□□ 1.04
COL7A1-202ENST00000422991 PRR5LQ6MZQ0 368 aa21.52■■□□□ 1.04
COL7A1-202ENST00000422991 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-202ENST00000422991 CLUAP1Q96AJ1 413 aa21.52■■□□□ 1.04
COL7A1-202ENST00000422991 UTP14AQ9BVJ6 771 aaKnown RBP21.52■■□□□ 1.04
COL7A1-202ENST00000422991 ABCC12Q96J65 1359 aa21.51■■□□□ 1.03
COL7A1-202ENST00000422991 RRP1P56182 461 aaKnown RBP21.51■■□□□ 1.03
COL7A1-202ENST00000422991 INTS3Q68E01 1043 aaKnown RBP21.51■■□□□ 1.03
COL7A1-202ENST00000422991 TPTE2Q6XPS3 522 aa21.51■■□□□ 1.03
COL7A1-202ENST00000422991 DZIP1LQ8IYY4 767 aaKnown RBP21.51■■□□□ 1.03
COL7A1-202ENST00000422991 TRMT112Q9UI30 125 aaKnown RBP21.51■■□□□ 1.03
COL7A1-202ENST00000422991 RIC1Q4ADV7 1423 aa21.51■■□□□ 1.03
COL7A1-202ENST00000422991 KIAA1551Q9HCM1 1747 aa21.5■■□□□ 1.03
COL7A1-202ENST00000422991 RLBP1P12271 317 aa21.5■■□□□ 1.03
COL7A1-202ENST00000422991 FTSJ3Q8IY81 847 aaKnown RBP21.5■■□□□ 1.03
COL7A1-202ENST00000422991 KLHL34Q8N239 644 aa21.5■■□□□ 1.03
COL7A1-202ENST00000422991 PCCAP05165 728 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-202ENST00000422991 NUTM1Q86Y26 1132 aa21.49■■□□□ 1.03
COL7A1-202ENST00000422991 ZBTB38Q8NAP3 1195 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-202ENST00000422991 SH3TC1Q8TE82 1336 aa21.49■■□□□ 1.03
COL7A1-202ENST00000422991 COL11A2P13942 1736 aaPredicted RBP21.49■■□□□ 1.03
COL7A1-202ENST00000422991 NPHP1O15259 732 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 MS4A1P11836 297 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 ST5P78524 1137 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 ERFEQ4G0M1 354 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 TMEM57Q8N5G2 664 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 PANK1Q8TE04 598 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 MYH3P11055 1940 aa21.48■■□□□ 1.03
COL7A1-202ENST00000422991 DLEC1Q9Y238 1755 aa21.47■■□□□ 1.03
COL7A1-202ENST00000422991 SYNE4Q8N205 404 aa21.47■■□□□ 1.03
COL7A1-202ENST00000422991 CCDC24Q8N4L8 307 aa21.47■■□□□ 1.03
COL7A1-202ENST00000422991 FAM89AQ96GI7 184 aa21.47■■□□□ 1.03
COL7A1-202ENST00000422991 H7C1W4 665 aa21.46■■□□□ 1.03
COL7A1-202ENST00000422991 GRM8O00222 908 aa21.46■■□□□ 1.03
COL7A1-202ENST00000422991 GTF2E1P29083 439 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-202ENST00000422991 PDE3AQ14432 1141 aa21.46■■□□□ 1.03
COL7A1-202ENST00000422991 UBE3BQ7Z3V4 1068 aa21.46■■□□□ 1.03
COL7A1-202ENST00000422991 CDHR2Q9BYE9 1310 aa21.46■■□□□ 1.03
COL7A1-202ENST00000422991 CENPBP07199 599 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-202ENST00000422991 CASP7P55210 303 aa21.45■■□□□ 1.02
COL7A1-202ENST00000422991 C20orf194Q5TEA3 1177 aa21.45■■□□□ 1.02
COL7A1-202ENST00000422991 JARID2Q92833 1246 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-202ENST00000422991 UTYO14607 1347 aa21.45■■□□□ 1.02
COL7A1-202ENST00000422991 RTL5Q5HYW3 569 aaPredicted RBP21.44■■□□□ 1.02
COL7A1-202ENST00000422991 SLC10A5Q5PT55 438 aa21.44■■□□□ 1.02
COL7A1-202ENST00000422991 BRIP1Q9BX63 1249 aa21.44■■□□□ 1.02
COL7A1-202ENST00000422991 USP44Q9H0E7 712 aa21.44■■□□□ 1.02
COL7A1-202ENST00000422991 C9orf78Q9NZ63 289 aaPredicted RBP21.44■■□□□ 1.02
COL7A1-202ENST00000422991 CD2APQ9Y5K6 639 aa21.44■■□□□ 1.02
COL7A1-202ENST00000422991 UTRNP46939 3433 aa21.43■■□□□ 1.02
COL7A1-202ENST00000422991 IRS4O14654 1257 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-202ENST00000422991 ITPRIPQ8IWB1 547 aa21.43■■□□□ 1.02
COL7A1-202ENST00000422991 SUPT16HQ9Y5B9 1047 aaKnown RBP21.43■■□□□ 1.02
COL7A1-202ENST00000422991 NBPF7P0C2Y1 421 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-202ENST00000422991 HCLS1P14317 486 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-202ENST00000422991 NLGN2Q8NFZ4 835 aa21.42■■□□□ 1.02
COL7A1-202ENST00000422991 BRCA1P38398 1863 aaKnown RBP21.41■■□□□ 1.02
COL7A1-202ENST00000422991 MVPQ14764 893 aaKnown RBP21.41■■□□□ 1.02
COL7A1-202ENST00000422991 MEIS3Q99687 375 aa21.41■■□□□ 1.02
COL7A1-202ENST00000422991 GOLGB1Q14789 3259 aaKnown RBP21.41■■□□□ 1.02
COL7A1-202ENST00000422991 KLRG2A4D1S0 409 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-202ENST00000422991 HSP90B1P14625 803 aaKnown RBP21.4■■□□□ 1.02
COL7A1-202ENST00000422991 PDE6BP35913 854 aa21.4■■□□□ 1.02
COL7A1-202ENST00000422991 C3orf67Q6ZVT6 689 aa21.4■■□□□ 1.02
COL7A1-202ENST00000422991 GPR162Q16538 588 aa21.39■■□□□ 1.01
COL7A1-202ENST00000422991 PLA2G12BQ9BX93 195 aa21.39■■□□□ 1.01
COL7A1-202ENST00000422991 COG6Q9Y2V7 657 aa21.39■■□□□ 1.01
COL7A1-202ENST00000422991 PDE8AO60658 829 aa21.38■■□□□ 1.01
COL7A1-202ENST00000422991 UBTFL1P0CB47 393 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-202ENST00000422991 CRY2Q49AN0 593 aa21.38■■□□□ 1.01
COL7A1-202ENST00000422991 SUCLG2Q96I99 432 aa21.38■■□□□ 1.01
COL7A1-202ENST00000422991 NLRP3Q96P20 1036 aa21.38■■□□□ 1.01
COL7A1-202ENST00000422991 CACNA1SQ13698 1873 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 GNAI3P08754 354 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 YY1P25490 414 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 CTSWP56202 376 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 TGFB2P61812 414 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 DDX19BQ9UMR2 479 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 PDZRN3Q9UPQ7 1066 aa21.37■■□□□ 1.01
COL7A1-202ENST00000422991 ZBTB7BO15156 539 aaPredicted RBP21.36■■□□□ 1.01
COL7A1-202ENST00000422991 C2CD5Q86YS7 1000 aa21.36■■□□□ 1.01
COL7A1-202ENST00000422991 KAZALD1Q96I82 304 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms