RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 NYXQ9GZU5 481 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 MROH2AA6NES4 1674 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 LOC102724428A0A0B4J2F2 783 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 SIK1P57059 783 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 ATP2B2Q01814 1243 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 WWC3Q9ULE0 1092 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 CTDP1Q9Y5B0 961 aaPredicted RBP10.84□□□□□ -0.67
LIG4-202ENST00000405925 APBA3O96018 575 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 ZNF853P0CG23 659 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 SAFBQ15424 915 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIG4-202ENST00000405925 CCDC24Q8N4L8 307 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 IKQ13123 557 aaPredicted RBP10.84□□□□□ -0.67
LIG4-202ENST00000405925 SUCLG2Q96I99 432 aa10.84□□□□□ -0.67
LIG4-202ENST00000405925 PNPLA6Q8IY17 1366 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 RNF123Q5XPI4 1314 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 PNMA6EA0A0J9YXQ4 647 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 MINDY4BA8MYZ0 360 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 IMMTQ16891 758 aaKnown RBP10.83□□□□□ -0.68
LIG4-202ENST00000405925 CPS1P31327 1500 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 CASTP20810 708 aaKnown RBP10.83□□□□□ -0.68
LIG4-202ENST00000405925 KRT32Q14532 448 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 PARP10Q53GL7 1025 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 NAPBQ9H115 298 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 DIP2AQ14689 1571 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 K7ELQ4 463 aaPredicted RBP10.83□□□□□ -0.68
LIG4-202ENST00000405925 KCNQ4P56696 695 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 CERKQ8TCT0 537 aa10.83□□□□□ -0.68
LIG4-202ENST00000405925 TFCP2Q12800 502 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 CNBD1Q8NA66 436 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 USP44Q9H0E7 712 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 ZBTB1Q9Y2K1 713 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 U3KPZ7 1027 aaPredicted RBP10.82□□□□□ -0.68
LIG4-202ENST00000405925 MED14O60244 1454 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 ABCC4O15439 1325 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 REREQ9P2R6 1566 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 L1TD1Q5T7N2 865 aaKnown RBP10.82□□□□□ -0.68
LIG4-202ENST00000405925 PDRG1Q9NUG6 133 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 NSFL1CQ9UNZ2 370 aaKnown RBP10.82□□□□□ -0.68
LIG4-202ENST00000405925 NEURL1BA8MQ27 555 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 USP5P45974 858 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 ANKRD1Q15327 319 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 BICD2Q8TD16 824 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 NUP133Q8WUM0 1156 aa10.82□□□□□ -0.68
LIG4-202ENST00000405925 KIAA1210Q9ULL0 1709 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 TCIRG1Q13488 830 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 DRC7Q8IY82 874 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 PIGBQ92521 554 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 ZNF594Q96JF6 807 aaPredicted RBP10.81□□□□□ -0.68
LIG4-202ENST00000405925 UBAC1Q9BSL1 405 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 UQCRFS1P1P0C7P4 283 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 ATP2B1P20020 1258 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 PARP3Q9Y6F1 533 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 OVOS2A0A0J9YW53 1432 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 OVOS2Q6IE36 1432 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 ITGA6P23229 1130 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 TIMM10P62072 90 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 NBPF14Q5TI25 921 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 OTUD7AQ8TE49 926 aaPredicted RBP10.81□□□□□ -0.68
LIG4-202ENST00000405925 ERBB4Q15303 1308 aa10.81□□□□□ -0.68
LIG4-202ENST00000405925 GOLGA6L6A8MZA4 724 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 PDCP20941 246 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 STK32BQ9NY57 414 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 TMOD2Q9NZR1 351 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.8□□□□□ -0.68
LIG4-202ENST00000405925 EYA2O00167 538 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 TRIM37O94972 964 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 TTF1Q15361 905 aaPredicted RBP10.8□□□□□ -0.68
LIG4-202ENST00000405925 SEPT12Q8IYM1 358 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 AFF2P51816 1311 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 DCAF8L1A6NGE4 600 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 PLEKHM2Q8IWE5 1019 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 PPLO60437 1756 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 IQGAP1P46940 1657 aa10.8□□□□□ -0.68
LIG4-202ENST00000405925 CCDC69A6NI79 296 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 PDE8AO60658 829 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 DNTTIP2Q5QJE6 756 aaKnown RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 NRDCO43847 1150 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 CLSTN1O94985 981 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 XBP1P17861 261 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 DEKP35659 375 aaKnown RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 BEND3Q5T5X7 828 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 POLR3DP05423 398 aaPredicted RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 CRKLP46109 303 aaKnown RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 HAND2P61296 217 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 ZNF772Q68DY9 489 aaPredicted RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 GOLGA6L3A6NEY3 463 aa10.79□□□□□ -0.68
LIG4-202ENST00000405925 THRAP3Q9Y2W1 955 aaKnown RBP10.79□□□□□ -0.68
LIG4-202ENST00000405925 MYO3AQ8NEV4 1616 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 ZNF213O14771 459 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 KRT27Q7Z3Y8 459 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 NEURL4Q96JN8 1562 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 RXRBP28702 533 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 A0A1B0GUL7 405 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 FAM196AQ6ZSG2 479 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 DBNDD2Q9BQY9 259 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 JCADQ9P266 1359 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 ARHGAP23Q9P227 1491 aa10.78□□□□□ -0.68
LIG4-202ENST00000405925 SKOR2Q2VWA4 1001 aaPredicted RBP10.77□□□□□ -0.68
LIG4-202ENST00000405925 SLC9C2Q5TAH2 1124 aa10.77□□□□□ -0.68
LIG4-202ENST00000405925 TRIM22Q8IYM9 498 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms