RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CPDO75976 1380 aa26.22■■□□□ 1.79
SHMT1-202ENST00000352886 CCDC171Q6TFL3 1326 aa26.22■■□□□ 1.79
SHMT1-202ENST00000352886 TRIM44Q96DX7 344 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-202ENST00000352886 HIP1O00291 1037 aa26.22■■□□□ 1.79
SHMT1-202ENST00000352886 ADCK5Q3MIX3 580 aa26.22■■□□□ 1.79
SHMT1-202ENST00000352886 TCHHQ07283 1943 aa26.21■■□□□ 1.79
SHMT1-202ENST00000352886 RPAP1Q9BWH6 1393 aaPredicted RBP26.21■■□□□ 1.79
SHMT1-202ENST00000352886 MBD3O95983 291 aa26.21■■□□□ 1.79
SHMT1-202ENST00000352886 NMIQ13287 307 aaPredicted RBP26.21■■□□□ 1.79
SHMT1-202ENST00000352886 JAKMIP1Q96N16 626 aaKnown RBP26.21■■□□□ 1.79
SHMT1-202ENST00000352886 FOXD4L6Q3SYB3 417 aaPredicted RBP26.2■■□□□ 1.79
SHMT1-202ENST00000352886 FOXD4L3Q6VB84 417 aaPredicted RBP26.2■■□□□ 1.79
SHMT1-202ENST00000352886 NECTIN1Q15223 517 aa26.2■■□□□ 1.78
SHMT1-202ENST00000352886 UBE3BQ7Z3V4 1068 aa26.2■■□□□ 1.78
SHMT1-202ENST00000352886 LAMB4A4D0S4 1761 aa26.2■■□□□ 1.78
SHMT1-202ENST00000352886 PRIM1P49642 420 aaKnown RBP26.19■■□□□ 1.78
SHMT1-202ENST00000352886 KCNB2Q92953 911 aa26.19■■□□□ 1.78
SHMT1-202ENST00000352886 GLI3P10071 1580 aa26.19■■□□□ 1.78
SHMT1-202ENST00000352886 CCDC173Q0VFZ6 552 aa26.19■■□□□ 1.78
SHMT1-202ENST00000352886 FSD1Q9BTV5 496 aa26.19■■□□□ 1.78
SHMT1-202ENST00000352886 PARP4Q9UKK3 1724 aaKnown RBP26.19■■□□□ 1.78
SHMT1-202ENST00000352886 ATP5J2-PTCD1G3V325 749 aa26.18■■□□□ 1.78
SHMT1-202ENST00000352886 PTCD1O75127 700 aaKnown RBP26.18■■□□□ 1.78
SHMT1-202ENST00000352886 ANP32BQ92688 251 aaKnown RBP26.18■■□□□ 1.78
SHMT1-202ENST00000352886 COPRSQ9NQ92 184 aa26.18■■□□□ 1.78
SHMT1-202ENST00000352886 PDRG1Q9NUG6 133 aa26.18■■□□□ 1.78
SHMT1-202ENST00000352886 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-202ENST00000352886 RBM8AQ9Y5S9 174 aaKnown RBP26.18■■□□□ 1.78
SHMT1-202ENST00000352886 TM6SF1Q9BZW5 370 aa26.18■■□□□ 1.78
SHMT1-202ENST00000352886 LARGE1O95461 756 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 VPS53Q5VIR6 699 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 ZSWIM6Q9HCJ5 1215 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 CYP46A1Q9Y6A2 500 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 ZKSCAN1P17029 563 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-202ENST00000352886 KCNJ4P48050 445 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 RFX5P48382 616 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-202ENST00000352886 MAP4K1Q92918 833 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 RBSNQ9H1K0 784 aa26.17■■□□□ 1.78
SHMT1-202ENST00000352886 A0A0D9SFI3 127 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 PTPN12Q05209 780 aaKnown RBP26.16■■□□□ 1.78
SHMT1-202ENST00000352886 A0A087WZG4 1122 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 SYCE3A1L190 88 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 CREB3L3Q68CJ9 461 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 PPP1R9BQ96SB3 815 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 GDPD2Q9HCC8 539 aa26.16■■□□□ 1.78
SHMT1-202ENST00000352886 XIRP1Q702N8 1843 aaKnown RBP26.16■■□□□ 1.78
SHMT1-202ENST00000352886 CLCN1P35523 988 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 RABL6Q3YEC7 729 aaPredicted RBP26.15■■□□□ 1.78
SHMT1-202ENST00000352886 PLBD2Q8NHP8 589 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 SNRKQ9NRH2 765 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 SMC3Q9UQE7 1217 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 ESPNB1AK53 854 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 HSPA2P54652 639 aa26.15■■□□□ 1.78
SHMT1-202ENST00000352886 ERBB4Q15303 1308 aa26.14■■□□□ 1.78
SHMT1-202ENST00000352886 LRSAM1Q6UWE0 723 aa26.14■■□□□ 1.78
SHMT1-202ENST00000352886 DDX54Q8TDD1 881 aaKnown RBP26.14■■□□□ 1.78
SHMT1-202ENST00000352886 COL15A1P39059 1388 aa26.14■■□□□ 1.77
SHMT1-202ENST00000352886 BRINP3Q76B58 766 aa26.14■■□□□ 1.77
SHMT1-202ENST00000352886 DBNLQ9UJU6 430 aaKnown RBP26.14■■□□□ 1.77
SHMT1-202ENST00000352886 SYT1P21579 422 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 TFCP2Q12800 502 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 TNNI3KQ59H18 835 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 CCDC83Q8IWF9 413 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 PRDM11Q9NQV5 511 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 FPGT-TNNI3KV9GXZ4 949 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 STX6O43752 255 aa26.13■■□□□ 1.77
SHMT1-202ENST00000352886 ZSCAN22P10073 491 aaPredicted RBP26.13■■□□□ 1.77
SHMT1-202ENST00000352886 WDR17Q8IZU2 1322 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 TOM1L2Q6ZVM7 507 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 USP48Q86UV5 1035 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 EDC3Q96F86 508 aaKnown RBP26.12■■□□□ 1.77
SHMT1-202ENST00000352886 MED23Q9ULK4 1368 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 PCDH11XQ9BZA7 1347 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 PCDH11YQ9BZA8 1340 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 SLC27A2O14975 620 aa26.12■■□□□ 1.77
SHMT1-202ENST00000352886 ZSCAN31Q96LW9 406 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-202ENST00000352886 GADD45BO75293 160 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-202ENST00000352886 CASP7P55210 303 aa26.11■■□□□ 1.77
SHMT1-202ENST00000352886 ZCRB1Q8TBF4 217 aaKnown RBP26.11■■□□□ 1.77
SHMT1-202ENST00000352886 NBPF26B4DH59 902 aa26.1■■□□□ 1.77
SHMT1-202ENST00000352886 NBPF14Q5TI25 921 aa26.1■■□□□ 1.77
SHMT1-202ENST00000352886 NBPF10Q6P3W6 841 aaKnown RBP26.1■■□□□ 1.77
SHMT1-202ENST00000352886 NBPF15Q8N660 670 aa26.1■■□□□ 1.77
SHMT1-202ENST00000352886 SH2B1Q9NRF2 756 aaPredicted RBP26.1■■□□□ 1.77
SHMT1-202ENST00000352886 ATP5JP18859 108 aa26.1■■□□□ 1.77
SHMT1-202ENST00000352886 ZNF589Q86UQ0 364 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-202ENST00000352886 UBR2Q8IWV8 1755 aa26.09■■□□□ 1.77
SHMT1-202ENST00000352886 GJB2P29033 226 aa26.08■■□□□ 1.77
SHMT1-202ENST00000352886 PSMA5P28066 241 aa26.08■■□□□ 1.77
SHMT1-202ENST00000352886 ME3Q16798 604 aa26.08■■□□□ 1.77
SHMT1-202ENST00000352886 RNF20Q5VTR2 975 aa26.08■■□□□ 1.77
SHMT1-202ENST00000352886 LMBR1LQ6UX01 489 aa26.08■■□□□ 1.77
SHMT1-202ENST00000352886 SYAP1Q96A49 352 aaPredicted RBP26.08■■□□□ 1.77
SHMT1-202ENST00000352886 DTNBO60941 627 aa26.07■■□□□ 1.76
SHMT1-202ENST00000352886 F13A1P00488 732 aa26.07■■□□□ 1.76
SHMT1-202ENST00000352886 CNPY2Q9Y2B0 182 aa26.07■■□□□ 1.76
SHMT1-202ENST00000352886 ST3GAL1Q11201 340 aa26.07■■□□□ 1.76
SHMT1-202ENST00000352886 COL9A3Q14050 684 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-202ENST00000352886 TMEM87AQ8NBN3 555 aa26.07■■□□□ 1.76
SHMT1-202ENST00000352886 NDUFB9Q9Y6M9 179 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 870.5 ms