RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 DBNDD2Q9BQY9 259 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 SLC5A1P13866 664 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 FAM89AQ96GI7 184 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 TPM3P06753 285 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 GUCY1B3Q02153 619 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 BCORL1Q5H9F3 1711 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 HMGN5P82970 282 aaKnown RBP7.41□□□□□ -1.22
PRKDC-202ENST00000338368 DZIP3Q86Y13 1208 aaKnown RBP7.41□□□□□ -1.22
PRKDC-202ENST00000338368 MINDY4BA8MYZ0 360 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 SIRT2Q8IXJ6 389 aa7.41□□□□□ -1.22
PRKDC-202ENST00000338368 CCDC47Q96A33 483 aaKnown RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 SGSM2O43147 1006 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 ZSCAN22P10073 491 aaPredicted RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 RAB3GAP1Q15042 981 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 TRIM34Q9BYJ4 488 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 RNF17Q9BXT8 1623 aaKnown RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 ERBB3P21860 1342 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 ESPNB1AK53 854 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 CCT2P78371 535 aaKnown RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 UBAC1Q9BSL1 405 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 EYA2O00167 538 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 TTF1Q15361 905 aaPredicted RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 R3HCC1Q9Y3T6 440 aaKnown RBP7.4□□□□□ -1.22
PRKDC-202ENST00000338368 MADDQ8WXG6 1647 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 ATP6V1AP38606 617 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 AK2P54819 239 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 TIMM10P62072 90 aa7.4□□□□□ -1.22
PRKDC-202ENST00000338368 MPNDQ8N594 471 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC191Q8NCU4 936 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 RAD50Q92878 1312 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 ZPR1O75312 459 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 ARID3AQ99856 593 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 HAND2P61296 217 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 MAP3K11Q16584 847 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 SNX14Q9Y5W7 946 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 OLFM4Q6UX06 510 aa7.4□□□□□ -1.23
PRKDC-202ENST00000338368 INTS4Q96HW7 963 aaKnown RBP7.4□□□□□ -1.23
PRKDC-202ENST00000338368 NPHP4O75161 1426 aaPredicted RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 DNAJC10Q8IXB1 793 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 PAG1Q9NWQ8 432 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC171Q6TFL3 1326 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 SPC24Q8NBT2 197 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 ZNF592Q92610 1267 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 VPS53Q5VIR6 699 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 C8orf76Q96K31 380 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 VIRMAQ69YN4 1812 aaKnown RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 TSR1Q2NL82 804 aaKnown RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 PPFIA3O75145 1194 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 ZFYP08048 801 aaPredicted RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 RNF113AO15541 343 aaKnown RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 CAMK4Q16566 473 aa7.39□□□□□ -1.23
PRKDC-202ENST00000338368 CDC5LQ99459 802 aaKnown RBP7.39□□□□□ -1.23
PRKDC-202ENST00000338368 TNNI3KQ59H18 835 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 SLC9C2Q5TAH2 1124 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 ZSCAN30Q86W11 494 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 FPGT-TNNI3KV9GXZ4 949 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 TOM1O60784 492 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 TPM1P09493 284 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.38□□□□□ -1.233e-8■■■□□ 15
PRKDC-202ENST00000338368 RBM27Q9P2N5 1060 aaKnown RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 XRCC6P12956 609 aaKnown RBP eCLIP7.38□□□□□ -1.235e-8■■■■□ 23.6
PRKDC-202ENST00000338368 CREB3L3Q68CJ9 461 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 ANKRD20A12PQ8NF67 263 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CDK12Q9NYV4 1490 aaPredicted RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 IRS4O14654 1257 aaPredicted RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 ARHGEF40Q8TER5 1519 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 IFIT3O14879 490 aaKnown RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CPSF1Q10570 1443 aaKnown RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC183Q5T5S1 534 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 NCOA7Q8NI08 942 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 EAF2Q96CJ1 260 aaPredicted RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 FAM227BQ96M60 508 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 STAP2Q9UGK3 403 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 EPB41L2O43491 1005 aaKnown RBP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 F13A1P00488 732 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CPA1P15085 419 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC152Q4G0S7 254 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC82Q8N4S0 544 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 TULP4Q9NRJ4 1543 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 FAM13BQ9NYF5 915 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 NIP7Q9Y221 180 aaKnown RBP eCLIP7.38□□□□□ -1.23
PRKDC-202ENST00000338368 OSBPL3Q9H4L5 887 aa7.38□□□□□ -1.23
PRKDC-202ENST00000338368 IBTKQ9P2D0 1353 aaPredicted RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 HELBQ8NG08 1087 aaPredicted RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 DDX19AQ9NUU7 478 aaKnown RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 MED14O60244 1454 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 CCDC196A0A1B0GTZ2 297 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 A0A1B0GUL7 405 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 PROSER3Q2NL68 480 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 HOMER1Q86YM7 354 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 WASF1Q92558 559 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 PRAMEF22A3QJZ6 481 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 IARSP41252 1262 aaKnown RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 UBE2HP62256 183 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 RUFY3Q7L099 469 aa7.37□□□□□ -1.23
PRKDC-202ENST00000338368 SMARCC1Q92922 1105 aaPredicted RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 KDM5AP29375 1690 aaKnown RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 CFAP65Q6ZU64 1925 aaKnown RBP7.37□□□□□ -1.23
PRKDC-202ENST00000338368 AOX1Q06278 1338 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms