RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 MCMDC2Q4G0Z9 681 aa19.53■□□□□ 0.72
PHRF1-201ENST00000264555 ZNF771Q7L3S4 317 aaPredicted RBP19.53■□□□□ 0.72
PHRF1-201ENST00000264555 FILIP1Q7Z7B0 1213 aa19.53■□□□□ 0.72
PHRF1-201ENST00000264555 CABLES1Q8TDN4 633 aa19.53■□□□□ 0.72
PHRF1-201ENST00000264555 KIAA0232Q92628 1395 aa19.52■□□□□ 0.72
PHRF1-201ENST00000264555 NCOA7Q8NI08 942 aa19.52■□□□□ 0.72
PHRF1-201ENST00000264555 IQCA1Q86XH1 822 aa19.52■□□□□ 0.72
PHRF1-201ENST00000264555 VSIG10Q8N0Z9 540 aa19.52■□□□□ 0.72
PHRF1-201ENST00000264555 RAB3GAP1Q15042 981 aa19.52■□□□□ 0.72
PHRF1-201ENST00000264555 TFIP11Q9UBB9 837 aaKnown RBP19.52■□□□□ 0.72
PHRF1-201ENST00000264555 IL2RBP14784 551 aa19.52■□□□□ 0.71
PHRF1-201ENST00000264555 CCDC112Q8NEF3 446 aa19.52■□□□□ 0.71
PHRF1-201ENST00000264555 ACBD3Q9H3P7 528 aa19.52■□□□□ 0.71
PHRF1-201ENST00000264555 KIF24Q5T7B8 1368 aa19.52■□□□□ 0.71
PHRF1-201ENST00000264555 CHD1O14646 1710 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 GOLGA8AA7E2F4 631 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 ZSCAN23Q3MJ62 389 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 USP16Q9Y5T5 823 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 USP5P45974 858 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 ZSCAN16Q9H4T2 348 aaPredicted RBP19.51■□□□□ 0.71
PHRF1-201ENST00000264555 KRT18P05783 430 aaKnown RBP19.51■□□□□ 0.71
PHRF1-201ENST00000264555 SSRP1Q08945 709 aaKnown RBP19.51■□□□□ 0.71
PHRF1-201ENST00000264555 BCL11BQ9C0K0 894 aaPredicted RBP19.51■□□□□ 0.71
PHRF1-201ENST00000264555 SHROOM2Q13796 1616 aa19.51■□□□□ 0.71
PHRF1-201ENST00000264555 ZNHIT6Q9NWK9 470 aaKnown RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 CDC42BPAQ5VT25 1732 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 NMIQ13287 307 aaPredicted RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 PLEKHF1Q96S99 279 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 TNNT3P45378 269 aaPredicted RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 CTCFLQ8NI51 663 aaPredicted RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 BRF1Q92994 677 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 ZNF521Q96K83 1311 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 TTLL5Q6EMB2 1281 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 DZIP1Q86YF9 867 aaKnown RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 NECAB1Q8N987 351 aa19.5■□□□□ 0.71
PHRF1-201ENST00000264555 RBM27Q9P2N5 1060 aaKnown RBP19.5■□□□□ 0.71
PHRF1-201ENST00000264555 HAND2P61296 217 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 ANKIB1Q9P2G1 1089 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 MCM5P33992 734 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 RANBP6O60518 1105 aaKnown RBP19.49■□□□□ 0.71
PHRF1-201ENST00000264555 CKAP2LQ8IYA6 745 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 MKNK2Q9HBH9 465 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 ATP2B3Q16720 1220 aa19.49■□□□□ 0.71
PHRF1-201ENST00000264555 PIBF1Q8WXW3 757 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 INTS4Q96HW7 963 aaKnown RBP19.48■□□□□ 0.71
PHRF1-201ENST00000264555 ORC3Q9UBD5 711 aaPredicted RBP19.48■□□□□ 0.71
PHRF1-201ENST00000264555 FAM135BQ49AJ0 1406 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 LTKP29376 864 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 IQGAP3Q86VI3 1631 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 FSIP1Q8NA03 581 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 USP25Q9UHP3 1055 aa19.48■□□□□ 0.71
PHRF1-201ENST00000264555 UVSSAQ2YD98 709 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 CCDC152Q4G0S7 254 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 LRSAM1Q6UWE0 723 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 BICC1Q9H694 974 aaKnown RBP19.47■□□□□ 0.71
PHRF1-201ENST00000264555 POLR3DP05423 398 aaPredicted RBP19.47■□□□□ 0.71
PHRF1-201ENST00000264555 IARSP41252 1262 aaKnown RBP19.47■□□□□ 0.71
PHRF1-201ENST00000264555 RBM5P52756 815 aaKnown RBP eCLIP19.47■□□□□ 0.711e-6■■□□□ 13.2
PHRF1-201ENST00000264555 TMEM67Q5HYA8 995 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 CAGE1Q8TC20 777 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 NGLY1Q96IV0 654 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 AATKQ6ZMQ8 1374 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 ABCC4O15439 1325 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 USP19O94966 1318 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 ZNF790Q6PG37 636 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 RAD50Q92878 1312 aa19.47■□□□□ 0.71
PHRF1-201ENST00000264555 OTUD7AQ8TE49 926 aaPredicted RBP19.47■□□□□ 0.71
PHRF1-201ENST00000264555 AOX1Q06278 1338 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 UQCRHLA0A096LP55 91 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 UQCRHP07919 91 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 CFAP100Q494V2 611 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 HSP90B2PQ58FF3 399 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 PAG1Q9NWQ8 432 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 PCDH11XQ9BZA7 1347 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 PCDH11YQ9BZA8 1340 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 MFSD6Q6ZSS7 791 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 CATIPQ7Z7H3 387 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 CCDC82Q8N4S0 544 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 ORAI2Q96SN7 254 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 LGR6Q9HBX8 967 aa19.46■□□□□ 0.71
PHRF1-201ENST00000264555 METAP2P50579 478 aaKnown RBP eCLIP19.45■□□□□ 0.71e-7■□□□□ 11.3
PHRF1-201ENST00000264555 TET3O43151 1660 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 KIF1BO60333 1816 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 CAVIN2O95810 425 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 KLHL34Q8N239 644 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 USP48Q86UV5 1035 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 TCEANC2Q96MN5 208 aa19.45■□□□□ 0.7
PHRF1-201ENST00000264555 RBM10P98175 930 aaKnown RBP19.44■□□□□ 0.7
PHRF1-201ENST00000264555 BMP2KQ9NSY1 1161 aaPredicted RBP19.44■□□□□ 0.7
PHRF1-201ENST00000264555 AK2P54819 239 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 TFCP2Q12800 502 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 HECW2Q9P2P5 1572 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 F13A1P00488 732 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 CREB3L3Q68CJ9 461 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 ZSCAN29Q8IWY8 852 aaPredicted RBP19.44■□□□□ 0.7
PHRF1-201ENST00000264555 RUFY1Q96T51 708 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 ATP7BP35670 1465 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 EFCAB6Q5THR3 1501 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 CLASP1Q7Z460 1538 aa19.44■□□□□ 0.7
PHRF1-201ENST00000264555 ERCC4Q92889 916 aaPredicted RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms