RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	SMY1	P32364	656 aa	Known RBP	4.57	□□□□□ -1.68
PUB1	YNL016W	MRS6	P32864	603 aa	Known RBP	4.57	□□□□□ -1.68
PUB1	YNL016W	BET3	P36149	193 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	GDH3	P39708	457 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	GEM1	P39722	662 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	FAF1	P40546	346 aa	Predicted RBP	4.57	□□□□□ -1.68
PUB1	YNL016W	HUL4	P40985	892 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	VTC4	P47075	721 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	PEX14	P53112	341 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	MET14	Q02196	202 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	DFG5	Q05031	458 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	EAF1	Q06337	982 aa		4.57	□□□□□ -1.68
PUB1	YNL016W	FOB1	O13329	566 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	DIT1	P21623	536 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	ARE1	P25628	610 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	PLC1	P32383	869 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	UGA4	P32837	571 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	PTH2	P34222	208 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	SCD5	P34758	872 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	VBA5	P36172	582 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	PFF1	P38244	976 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	PBY1	P38254	753 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	YAP1801	P38856	637 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	RAD55	P38953	406 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	SRB7	P47822	140 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	HSV2	P50079	448 aa	Predicted RBP	4.56	□□□□□ -1.68
PUB1	YNL016W	YBP2	P53169	641 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	MEH1	Q02205	184 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	ULP1	Q02724	621 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	PSR2	Q07949	397 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	FAP7	Q12055	197 aa	Predicted RBP	4.56	□□□□□ -1.68
PUB1	YNL016W	RRP6	Q12149	733 aa	Known RBP	4.56	□□□□□ -1.68
PUB1	YNL016W	SEC3	P33332	1336 aa	Known RBP	4.56	□□□□□ -1.68
PUB1	YNL016W	AUS1	Q08409	1394 aa		4.56	□□□□□ -1.68
PUB1	YNL016W	TY4B-P	A0A0B7P3V8	1104 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	TAF13	P11747	167 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
PUB1	YNL016W	VMA3	P25515	160 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	ICL1	P28240	557 aa	Predicted RBP	4.55	□□□□□ -1.68
PUB1	YNL016W	UTR2	P32623	467 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	JNM1	P36224	373 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	SEA4	P38164	1038 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	EXO84	P38261	753 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	RRP8	P38961	392 aa	Known RBP	4.55	□□□□□ -1.68
PUB1	YNL016W	RGD2	P43556	714 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	MPP10	P47083	593 aa	Known RBP	4.55	□□□□□ -1.68
PUB1	YNL016W	YPQ2	Q06328	317 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	TRE2	Q08693	809 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	TY4A-H	Q6Q5P6	413 aa		4.55	□□□□□ -1.68
PUB1	YNL016W	TRP2	P00899	507 aa	Known RBP	4.54	□□□□□ -1.68
PUB1	YNL016W	GAL1	P04385	528 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	RPS9B	P05755	195 aa	Known RBP	4.54	□□□□□ -1.68
PUB1	YNL016W	MEF1	P25039	761 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	IRS4	P36115	615 aa	Known RBP	4.54	□□□□□ -1.68
PUB1	YNL016W	OMA1	P36163	345 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	TAT1	P38085	619 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	PSY2	P40164	858 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	ALA1	P40825	983 aa	Known RBP	4.54	□□□□□ -1.68
PUB1	YNL016W	INP52	P50942	1183 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	GIC2	Q06648	383 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	MRL1	Q06815	381 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	TIF6	Q12522	245 aa	Known RBP	4.54	□□□□□ -1.68
PUB1	YNL016W	MDM12	Q92328	271 aa		4.54	□□□□□ -1.68
PUB1	YNL016W	INH1	P01097	85 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	CDC31	P06704	161 aa	Known RBP	4.53	□□□□□ -1.68
PUB1	YNL016W	PTP2	P29461	750 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	LYP1	P32487	611 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	MKK2	P32491	506 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	ABD1	P32783	436 aa	Predicted RBP	4.53	□□□□□ -1.68
PUB1	YNL016W	HSP78	P33416	811 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	LDH1	P38139	375 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	MUM2	P38236	366 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	SHC1	P39000	512 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	MGS1	P40151	587 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	SEC26	P41810	973 aa	Known RBP	4.53	□□□□□ -1.68
PUB1	YNL016W	AVT1	P47082	602 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
PUB1	YNL016W	YML131W	Q03102	365 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	MSH6	Q03834	1242 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	YDL124W	Q07551	312 aa	Known RBP	4.53	□□□□□ -1.68
PUB1	YNL016W	PSK2	Q08217	1101 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	FIG2	P25653	1609 aa		4.53	□□□□□ -1.68
PUB1	YNL016W	PRP9	P19736	530 aa	Known RBP	4.53	□□□□□ -1.69
PUB1	YNL016W	MSN1	P22148	382 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	GFD2	P25370	566 aa	Known RBP	4.53	□□□□□ -1.69
PUB1	YNL016W	SWI3	P32591	825 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	TFC4	P33339	1025 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	MKS1	P34072	584 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	TFC3	P34111	1160 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	APL2	P36000	726 aa	Predicted RBP	4.53	□□□□□ -1.69
PUB1	YNL016W	RRN3	P36070	627 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	HXT13	P39924	564 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	YIL089W	P40500	205 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.69	not detected
PUB1	YNL016W	SDA1	P53313	767 aa	Known RBP	4.53	□□□□□ -1.69
PUB1	YNL016W	HXT17	P53631	564 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	HXT15	P54854	567 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	ISU1	Q03020	165 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	ERO1	Q03103	563 aa		4.53	□□□□□ -1.69
PUB1	YNL016W	HFD1	Q04458	532 aa		4.53	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms