RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DDR48	YMR173W	STU2	P46675	888 aa		4.29	□□□□□ -1.72
DDR48	YMR173W	TYW3	P53177	273 aa		4.29	□□□□□ -1.72
DDR48	YMR173W	YLL058W	Q12198	575 aa		4.29	□□□□□ -1.72
DDR48	YMR173W	INO1	P11986	533 aa		4.28	□□□□□ -1.72
DDR48	YMR173W	URM1	P40554	99 aa	Predicted RBP	4.28	□□□□□ -1.72
DDR48	YMR173W	LGE1	Q02796	332 aa	Known RBP	4.28	□□□□□ -1.72
DDR48	YMR173W	MCH5	Q08777	521 aa		4.28	□□□□□ -1.72
DDR48	YMR173W	YPL066W	Q12194	479 aa		4.28	□□□□□ -1.72
DDR48	YMR173W	SRP101	P32916	621 aa		4.27	□□□□□ -1.73
DDR48	YMR173W	YKL107W	P34251	309 aa		4.27	□□□□□ -1.73
DDR48	YMR173W	MOT2	P34909	587 aa	Known RBP	4.27	□□□□□ -1.73
DDR48	YMR173W	YKL151C	P36059	337 aa		4.27	□□□□□ -1.73
DDR48	YMR173W	SNF7	P39929	240 aa	Known RBP	4.27	□□□□□ -1.73
DDR48	YMR173W	SNM1	P40993	198 aa		4.27	□□□□□ -1.73
DDR48	YMR173W	STB4	P50104	949 aa		4.27	□□□□□ -1.73
DDR48	YMR173W	KTR4	P38131	464 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	ECM21	P38167	1117 aa	Known RBP	4.26	□□□□□ -1.73
DDR48	YMR173W	CCC2	P38995	1004 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	KRI1	P42846	591 aa	Known RBP	4.26	□□□□□ -1.73
DDR48	YMR173W	PSP2	P50109	593 aa	Known RBP	4.26	□□□□□ -1.73
DDR48	YMR173W	SPO20	Q04359	397 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	WHI4	Q07655	649 aa	Known RBP	4.26	□□□□□ -1.73
DDR48	YMR173W	IRC10	Q08118	586 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	MDM38	Q08179	573 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	GUP2	Q08929	609 aa		4.26	□□□□□ -1.73
DDR48	YMR173W	HSF1	P10961	833 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	CLN2	P20438	545 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
DDR48	YMR173W	CUE2	P36075	443 aa	Known RBP	4.25	□□□□□ -1.73
DDR48	YMR173W	YGL176C	P46945	554 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	HRQ1	Q05549	1077 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	OMS1	Q06668	471 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	PIN2	Q12057	282 aa		4.25	□□□□□ -1.73
DDR48	YMR173W	ERG4	P25340	473 aa		4.24	□□□□□ -1.73
DDR48	YMR173W	SRT1	Q03175	343 aa		4.24	□□□□□ -1.73
DDR48	YMR173W	YMR206W	Q03695	313 aa		4.24	□□□□□ -1.73
DDR48	YMR173W	ACF2	Q12168	779 aa		4.24	□□□□□ -1.73
DDR48	YMR173W	AGP1	P25376	633 aa		4.23	□□□□□ -1.73
DDR48	YMR173W	SBA1	P28707	216 aa	Known RBP	4.23	□□□□□ -1.73
DDR48	YMR173W	ATG19	P35193	415 aa		4.23	□□□□□ -1.73
DDR48	YMR173W	GIC1	P38785	314 aa		4.23	□□□□□ -1.73
DDR48	YMR173W	FAA4	P47912	694 aa	Known RBP	4.23	□□□□□ -1.73
DDR48	YMR173W	VPS16	Q03308	798 aa		4.23	□□□□□ -1.73
DDR48	YMR173W	TRP4	P07285	380 aa	Predicted RBP	4.22	□□□□□ -1.73
DDR48	YMR173W	CAD1	P24813	409 aa	Known RBP	4.22	□□□□□ -1.73
DDR48	YMR173W	FUN30	P31380	1131 aa		4.22	□□□□□ -1.73
DDR48	YMR173W	YLR225C	Q05948	407 aa	Known RBP	4.22	□□□□□ -1.73
DDR48	YMR173W	MTH1	P35198	433 aa		4.21	□□□□□ -1.74
DDR48	YMR173W	TIM44	Q01852	431 aa		4.21	□□□□□ -1.74
DDR48	YMR173W	MUK1	Q02866	612 aa		4.21	□□□□□ -1.74
DDR48	YMR173W	GDE1	Q02979	1223 aa		4.21	□□□□□ -1.74
DDR48	YMR173W	SHE9	Q04172	456 aa		4.21	□□□□□ -1.74
DDR48	YMR173W	RPC82	P32349	654 aa		4.2	□□□□□ -1.74
DDR48	YMR173W	RNT1	Q02555	471 aa		4.2	□□□□□ -1.74
DDR48	YMR173W	UPC2	Q12151	913 aa		4.2	□□□□□ -1.74
DDR48	YMR173W	TRM13	Q12383	476 aa		4.2	□□□□□ -1.74
DDR48	YMR173W	CDC12	P32468	407 aa	Known RBP	4.19	□□□□□ -1.74
DDR48	YMR173W	SAH1	P39954	449 aa	Known RBP	4.19	□□□□□ -1.74
DDR48	YMR173W	NPP2	P39997	493 aa		4.19	□□□□□ -1.74
DDR48	YMR173W	GND2	P53319	492 aa		4.19	□□□□□ -1.74
DDR48	YMR173W	ABD1	P32783	436 aa	Predicted RBP	4.18	□□□□□ -1.74
DDR48	YMR173W	MAD1	P40957	749 aa		4.18	□□□□□ -1.74
DDR48	YMR173W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
DDR48	YMR173W	ESC2	Q06340	456 aa		4.18	□□□□□ -1.74
DDR48	YMR173W	PPR1	P07272	904 aa	Predicted RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	ALG7	P07286	448 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	STE14	P32584	239 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	SPC42	P36094	363 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	YKR078W	P36158	585 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	YBR238C	P38330	731 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	GYP7	P48365	746 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	SNU71	P53207	620 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	SFB2	P53953	876 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	SLU7	Q02775	382 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	SRP1	Q02821	542 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	OPI10	Q08202	246 aa		4.17	□□□□□ -1.74
DDR48	YMR173W	FAL1	Q12099	399 aa	Known RBP	4.17	□□□□□ -1.74
DDR48	YMR173W	ERG5	P54781	538 aa		4.16	□□□□□ -1.74
DDR48	YMR173W	NDJ1	Q12366	352 aa		4.16	□□□□□ -1.74
DDR48	YMR173W	MRP8	P35719	219 aa		4.15	□□□□□ -1.75
DDR48	YMR173W	VBA5	P36172	582 aa		4.15	□□□□□ -1.75
DDR48	YMR173W	MBP1	P39678	833 aa		4.15	□□□□□ -1.75
DDR48	YMR173W	YKE2	P52553	114 aa		4.15	□□□□□ -1.75
DDR48	YMR173W	CWC24	P53769	259 aa		4.15	□□□□□ -1.75
DDR48	YMR173W	SED4	P25365	1065 aa		4.14	□□□□□ -1.75
DDR48	YMR173W	SIT1	P39980	628 aa		4.14	□□□□□ -1.75
DDR48	YMR173W	YER158C	P40095	573 aa		4.14	□□□□□ -1.75
DDR48	YMR173W	DUS3	Q06053	668 aa	Known RBP	4.14	□□□□□ -1.75
DDR48	YMR173W	SCT1	P32784	759 aa		4.13	□□□□□ -1.75
DDR48	YMR173W	YKL069W	P36088	180 aa		4.13	□□□□□ -1.75
DDR48	YMR173W	PAM1	P37304	830 aa	Known RBP	4.13	□□□□□ -1.75
DDR48	YMR173W	PBY1	P38254	753 aa		4.13	□□□□□ -1.75
DDR48	YMR173W	SDS3	P40505	327 aa		4.13	□□□□□ -1.75
DDR48	YMR173W	JIP5	Q06214	492 aa	Predicted RBP	4.13	□□□□□ -1.75
DDR48	YMR173W	YPR196W	Q06595	470 aa		4.13	□□□□□ -1.75
DDR48	YMR173W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
DDR48	YMR173W	TSL1	P38427	1098 aa	Known RBP	4.12	□□□□□ -1.75
DDR48	YMR173W	SPF1	P39986	1215 aa	Known RBP	4.12	□□□□□ -1.75
DDR48	YMR173W	PEX2	P32800	271 aa		4.11	□□□□□ -1.75
DDR48	YMR173W	IRR1	P40541	1150 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 52.5 ms