RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	ATG3	P40344	310 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	SHQ1	P40486	507 aa	Predicted RBP	5.23	□□□□□ -1.57
CAF4	YKR036C	TAF1	P46677	1066 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	YKE2	P52553	114 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	ZPR1	P53303	486 aa	Known RBP	5.23	□□□□□ -1.57
CAF4	YKR036C	YML119W	Q03208	357 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	TAF9	Q05027	157 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	ALR1	Q08269	859 aa		5.23	□□□□□ -1.57
CAF4	YKR036C	RPS6A	P0CX37	236 aa	Known RBP	5.22	□□□□□ -1.57
CAF4	YKR036C	RPS6B	P0CX38	236 aa	Predicted RBP	5.22	□□□□□ -1.57
CAF4	YKR036C	RPN2	P32565	945 aa	Known RBP	5.22	□□□□□ -1.57
CAF4	YKR036C	SRB4	P32569	687 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	PTH2	P34222	208 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	CIC1	P38779	376 aa	Known RBP	5.22	□□□□□ -1.57
CAF4	YKR036C	VTC2	P43585	828 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	DAS1	P47005	663 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	PIB2	P53191	635 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	SPN1	Q06505	410 aa	Predicted RBP	5.22	□□□□□ -1.57
CAF4	YKR036C	YOR296W	Q08748	1289 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	AFT2	Q08957	416 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	SLX4	Q12098	748 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	HIF1	Q12373	385 aa		5.22	□□□□□ -1.57
CAF4	YKR036C	RPL22A	P05749	121 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	MTF2	P10849	440 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.21	□□□□□ -1.57	not detected
CAF4	YKR036C	SPO12	P17123	173 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	YCR051W	P25631	222 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	ATO2	P32907	282 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	RPT3	P33298	428 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	YBR062C	P38239	180 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	TDA3	P38758	523 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	ARB1	P40024	610 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	SYG1	P40528	902 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	BUD6	P41697	788 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	RPA14	P50106	137 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	MDR1	P53258	950 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	YNL144C	P53907	740 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	YKR005C	Q02203	525 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	VPS16	Q03308	798 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	PPM1	Q04081	328 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	VTI1	Q04338	217 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	POB3	Q04636	552 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	HCR1	Q05775	265 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	YLR225C	Q05948	407 aa	Known RBP	5.21	□□□□□ -1.57
CAF4	YKR036C	PIG1	Q06216	648 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	TAF10	Q12030	206 aa		5.21	□□□□□ -1.57
CAF4	YKR036C	PET122	P10355	254 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	THR4	P16120	514 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	CKI1	P20485	582 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	SPO11	P23179	398 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	RPC19	P28000	142 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	MVD1	P32377	396 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	GCG1	P32656	232 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	PET112	P33893	541 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	CTM1	P38818	585 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	KEL1	P38853	1164 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	YIR042C	P40586	236 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	FMS1	P50264	508 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	TEL2	P53038	688 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	MLC1	P53141	149 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	GFD1	Q04839	188 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	PPM2	Q08282	695 aa		5.21	□□□□□ -1.58
CAF4	YKR036C	NEW1	Q08972	1196 aa	Known RBP	5.21	□□□□□ -1.58
CAF4	YKR036C	ENO2	P00925	437 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	HXK1	P04806	485 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	BAS1	P22035	811 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	STE13	P33894	931 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	SQT1	P35184	431 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	GPD2	P41911	440 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	TDA10	P42938	290 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	UBP6	P43593	499 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	FYV8	P46949	817 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	SFB2	P53953	876 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	ATP25	Q03153	612 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	PEX29	Q03370	554 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	PLP1	Q04004	230 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	SXM1	Q04175	944 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	MRD1	Q06106	887 aa	Known RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	SPP382	Q06411	708 aa	Predicted RBP	5.2	□□□□□ -1.58
CAF4	YKR036C	YPR097W	Q06839	1073 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	VAM6	Q07468	1049 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	YLR001C	Q07895	862 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
CAF4	YKR036C	NCB2	Q92317	146 aa		5.2	□□□□□ -1.58
CAF4	YKR036C	PMA1	P05030	918 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	TOM70	P07213	617 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	RPB2	P08518	1224 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	SEC18	P18759	758 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	EFB1	P32471	206 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	MRP8	P35719	219 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	KES1	P35844	434 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	DBP7	P36120	742 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	GLO3	P38682	493 aa	Known RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	CCM1	P48237	864 aa	Predicted RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	UFD2	P54860	961 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	USA1	Q03714	838 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	GIR2	Q03768	265 aa	Predicted RBP	5.19	□□□□□ -1.58
CAF4	YKR036C	RSM24	Q03976	319 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	ATG26	Q06321	1198 aa		5.19	□□□□□ -1.58
CAF4	YKR036C	RRP6	Q12149	733 aa	Known RBP	5.19	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms