RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	SWI1	P09547	1314 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.3	□□□□□ -1.56	not detected
UBC8	YEL012W	BAS1	P22035	811 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	MGM1	P32266	881 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	LYP1	P32487	611 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	TED1	P40533	473 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	MTC3	P53077	123 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	RRT6	P53117	311 aa	Predicted RBP	5.3	□□□□□ -1.56
UBC8	YEL012W	RPN4	Q03465	531 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	ESC2	Q06340	456 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	THI3	Q07471	609 aa		5.3	□□□□□ -1.56
UBC8	YEL012W	FAL1	Q12099	399 aa	Known RBP	5.3	□□□□□ -1.56
UBC8	YEL012W	CIT2	P08679	460 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.29	□□□□□ -1.56	not detected
UBC8	YEL012W	RAD27	P26793	382 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	MKK2	P32491	506 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	SRP40	P32583	406 aa	Predicted RBP	5.29	□□□□□ -1.56
UBC8	YEL012W	STE5	P32917	917 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	ARL1	P38116	183 aa	Known RBP	5.29	□□□□□ -1.56
UBC8	YEL012W	SEA4	P38164	1038 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	BUD6	P41697	788 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	ZDS1	P50111	915 aa	Known RBP	5.29	□□□□□ -1.56
UBC8	YEL012W	SGD1	Q06132	899 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	SLP1	Q12232	587 aa		5.29	□□□□□ -1.56
UBC8	YEL012W	PRD1	P25375	712 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	AGP1	P25376	633 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	YKL091C	P33324	310 aa	Known RBP	5.28	□□□□□ -1.56
UBC8	YEL012W	PGM2	P37012	569 aa	Known RBP	5.28	□□□□□ -1.56
UBC8	YEL012W	RTR1	P40084	226 aa	Predicted RBP	5.28	□□□□□ -1.56
UBC8	YEL012W	GCV1	P48015	400 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	HUL5	P53119	910 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	TYW3	P53177	273 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	IRC4	Q03036	179 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	PRP42	Q03776	544 aa	Known RBP	5.28	□□□□□ -1.56
UBC8	YEL012W	SPO71	Q03868	1245 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	RBA50	Q04418	439 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	EST2	Q06163	884 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	PPM2	Q08282	695 aa		5.28	□□□□□ -1.56
UBC8	YEL012W	DUR1,2	P32528	1835 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	TY4B-P	A0A0B7P3V8	1104 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	LCB1	P25045	558 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	ADD66	P36040	267 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	NUP133	P36161	1157 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.27	□□□□□ -1.57	not detected
UBC8	YEL012W	ALG14	P38242	237 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	NAN1	Q02931	896 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	TIF35	Q04067	274 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	THI22	Q06490	572 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	RTT109	Q07794	436 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	YOL057W	Q08225	711 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	CDC53	Q12018	815 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	PUS1	Q12211	544 aa	Known RBP	5.27	□□□□□ -1.57
UBC8	YEL012W	TY4A-H	Q6Q5P6	413 aa		5.27	□□□□□ -1.57
UBC8	YEL012W	DED1	P06634	604 aa	Known RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	ERS1	P17261	260 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	ABD1	P32783	436 aa	Predicted RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	YHR020W	P38708	688 aa	Known RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	NMD2	P38798	1089 aa	Known RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	RNH70	P53331	553 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	YVH1	Q02256	364 aa	Known RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	RKM2	Q03942	479 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	UBX2	Q04228	584 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	YLR225C	Q05948	407 aa	Known RBP	5.26	□□□□□ -1.57
UBC8	YEL012W	ELG1	Q12050	791 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	YPL066W	Q12194	479 aa		5.26	□□□□□ -1.57
UBC8	YEL012W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.25	□□□□□ -1.57	not detected
UBC8	YEL012W	DBP5	P20449	482 aa	Known RBP	5.25	□□□□□ -1.57
UBC8	YEL012W	SYP1	P25623	870 aa	Known RBP	5.25	□□□□□ -1.57
UBC8	YEL012W	SBA1	P28707	216 aa	Known RBP	5.25	□□□□□ -1.57
UBC8	YEL012W	RPT3	P33298	428 aa	Known RBP	5.25	□□□□□ -1.57
UBC8	YEL012W	VBA5	P36172	582 aa		5.25	□□□□□ -1.57
UBC8	YEL012W	REI1	P38344	393 aa	Predicted RBP	5.25	□□□□□ -1.57
UBC8	YEL012W	NIT1	P40447	199 aa		5.25	□□□□□ -1.57
UBC8	YEL012W	SPO74	P45819	413 aa		5.25	□□□□□ -1.57
UBC8	YEL012W	IOC4	Q04213	475 aa		5.25	□□□□□ -1.57
UBC8	YEL012W	YBR184W	P38299	523 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	MAM1	P40065	302 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	DOS2	P54858	310 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	DNM1	P54861	757 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	SHE9	Q04172	456 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	SPO20	Q04359	397 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	YDR306C	Q06640	478 aa		5.24	□□□□□ -1.57
UBC8	YEL012W	INO1	P11986	533 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	SAC7	P17121	654 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	SWC3	P31376	625 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	PAH1	P32567	862 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	MDJ1	P35191	511 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	SPC42	P36094	363 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	KEL1	P38853	1164 aa	Known RBP	5.23	□□□□□ -1.57
UBC8	YEL012W	MPH1	P40562	993 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	CNN1	P43618	361 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	PFD1	P46988	109 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	TIM54	P47045	478 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	MPP10	P47083	593 aa	Known RBP	5.23	□□□□□ -1.57
UBC8	YEL012W	YGR045C	P53229	120 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	FMP25	Q08023	583 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	ALG6	Q12001	544 aa	Known RBP	5.23	□□□□□ -1.57
UBC8	YEL012W	NHA1	Q99271	985 aa		5.23	□□□□□ -1.57
UBC8	YEL012W	FBP1	P09201	348 aa		5.22	□□□□□ -1.57
UBC8	YEL012W	MRP7	P12687	371 aa		5.22	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 191.5 ms