RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	LTV1	P34078	463 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	FIR1	P40020	876 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	YER156C	P40093	338 aa	Known RBP	5.09	□□□□□ -1.59
CDC48	YDL126C	MEP1	P40260	492 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	RIX7	Q07844	837 aa	Known RBP	5.09	□□□□□ -1.59
CDC48	YDL126C	NTG2	Q08214	380 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	YLR125W	Q12138	136 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	TY4B-P	A0A0B7P3V8	1104 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	SRM1	P21827	482 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	ROX1	P25042	368 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	HIR1	P32479	840 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	APM2	P38700	605 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	PEX28	P38848	579 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	IES1	P43579	692 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	NNF2	P53253	936 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	UTP8	P53276	713 aa	Known RBP	5.09	□□□□□ -1.59
CDC48	YDL126C	HOL1	P53389	586 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	SRT1	Q03175	343 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	YSH1	Q06224	779 aa	Predicted RBP	5.09	□□□□□ -1.59
CDC48	YDL126C	RRP9	Q06506	573 aa	Known RBP	5.09	□□□□□ -1.59
CDC48	YDL126C	YOR131C	Q12486	218 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	TY4A-H	Q6Q5P6	413 aa		5.09	□□□□□ -1.59
CDC48	YDL126C	HOM3	P10869	527 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	BAS1	P22035	811 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	RAD51	P25454	400 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	BLI1	P35727	113 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	IRR1	P40541	1150 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	MEC3	Q02574	474 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	FAL1	Q12099	399 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	BMT6	Q12291	365 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	GLO4	Q12320	285 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	RGP1	P16664	663 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	MSH3	P25336	1018 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	HBS1	P32769	611 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	YBR287W	P38355	427 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	MSC7	P38694	644 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	AIR1	P40507	360 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	PRP3	Q03338	469 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	BMS1	Q08965	1183 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	TMA46	Q12000	345 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	DBP10	Q12389	995 aa	Known RBP	5.08	□□□□□ -1.6
CDC48	YDL126C	RIM15	P43565	1770 aa		5.08	□□□□□ -1.6
CDC48	YDL126C	COQ4	O13525	335 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	RPP2B	P02400	110 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	ATP4	P05626	244 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-DR6	P0CX70	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-ER1	P0CX71	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-LR2	P0CX72	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-PL	P0CX73	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-JR1	P0CX74	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-LR3	P0CX75	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-ML2	P0CX76	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	SBP1	P10080	294 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	POL4	P25615	582 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	STO1	P34160	861 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	DLD3	P39976	496 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	UTP14	Q04500	899 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	ATG13	Q06628	738 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	MRL1	Q06815	381 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-GR1	Q12085	440 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	TY1A-OL	Q92392	440 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	ROM2	P51862	1356 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	IDI1	P15496	288 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	DJP1	P40564	432 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	IMH1	Q06704	911 aa	Known RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	YLR001C	Q07895	862 aa		5.07	□□□□□ -1.6
CDC48	YDL126C	CLF1	Q12309	687 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC48	YDL126C	MRP10	O75012	95 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	SBA1	P28707	216 aa	Known RBP	5.06	□□□□□ -1.6
CDC48	YDL126C	TCD1	P38756	429 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	LEM3	P42838	414 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	YLR225C	Q05948	407 aa	Known RBP	5.06	□□□□□ -1.6
CDC48	YDL126C	PMT7	Q06644	662 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	APL5	Q08951	932 aa	Known RBP	5.06	□□□□□ -1.6
CDC48	YDL126C	YKL133C	P36066	463 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	HSE1	P38753	452 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	YGR125W	P53273	1036 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	ADE16	P54113	591 aa	Known RBP	5.06	□□□□□ -1.6
CDC48	YDL126C	TIF35	Q04067	274 aa	Known RBP	5.06	□□□□□ -1.6
CDC48	YDL126C	ADR1	P07248	1323 aa		5.06	□□□□□ -1.6
CDC48	YDL126C	NAT1	P12945	854 aa	Known RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	MEF1	P25039	761 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	URA1	P28272	314 aa	Predicted RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	LYP1	P32487	611 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	AFG2	P32794	780 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	PEA2	P40091	420 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	SIP5	P40210	489 aa	Known RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	ENT3	P47160	408 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	HOS2	P53096	452 aa	Predicted RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	ROD1	Q02805	837 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	BUL2	Q03758	920 aa	Known RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	RTP1	Q12751	981 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	PGI1	P12709	554 aa	Known RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	AFT1	P22149	690 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	VRP1	P37370	817 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	RSC1	P53236	928 aa		5.05	□□□□□ -1.6
CDC48	YDL126C	BIO5	P53744	561 aa	Known RBP	5.05	□□□□□ -1.6
CDC48	YDL126C	VPS30	Q02948	557 aa		5.05	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms