RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 DDX21Q9NR30 783 aaKnown RBP eCLIP25.32■■□□□ 1.64
SHKBP1-221ENST00000599833 CHPF2Q9P2E5 772 aa25.32■■□□□ 1.64
SHKBP1-221ENST00000599833 ELL2O00472 640 aaPredicted RBP25.31■■□□□ 1.64
SHKBP1-221ENST00000599833 CD2APQ9Y5K6 639 aa25.31■■□□□ 1.64
SHKBP1-221ENST00000599833 ANKRD31Q8N7Z5 1873 aa25.31■■□□□ 1.64
SHKBP1-221ENST00000599833 CLEC4GQ6UXB4 293 aa25.3■■□□□ 1.64
SHKBP1-221ENST00000599833 MAP3K15Q6ZN16 1313 aa25.3■■□□□ 1.64
SHKBP1-221ENST00000599833 BRCA1P38398 1863 aaKnown RBP25.3■■□□□ 1.64
SHKBP1-221ENST00000599833 PARP3Q9Y6F1 533 aa25.29■■□□□ 1.64
SHKBP1-221ENST00000599833 N4BP2Q86UW6 1770 aaPredicted RBP25.28■■□□□ 1.64
SHKBP1-221ENST00000599833 PXDNLA1KZ92 1463 aa25.28■■□□□ 1.64
SHKBP1-221ENST00000599833 ERVV-1B6SEH8 477 aa25.28■■□□□ 1.64
SHKBP1-221ENST00000599833 ANKRD36CQ5JPF3 1778 aa25.28■■□□□ 1.64
SHKBP1-221ENST00000599833 CARMIL3Q8ND23 1372 aa25.27■■□□□ 1.64
SHKBP1-221ENST00000599833 ATP10DQ9P241 1426 aa25.27■■□□□ 1.64
SHKBP1-221ENST00000599833 DBF4Q9UBU7 674 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-221ENST00000599833 SERPINB2P05120 415 aa25.25■■□□□ 1.63
SHKBP1-221ENST00000599833 TWISTNBQ3B726 338 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-221ENST00000599833 BICDL1Q6ZP65 573 aa25.25■■□□□ 1.63
SHKBP1-221ENST00000599833 COPS6Q7L5N1 327 aa25.25■■□□□ 1.63
SHKBP1-221ENST00000599833 XAGE3Q8WTP9 111 aa25.25■■□□□ 1.63
SHKBP1-221ENST00000599833 ARFGEF2Q9Y6D5 1785 aa25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 VAMP4O75379 141 aa25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 EXOSC9Q06265 439 aaKnown RBP25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 TRMT2AQ8IZ69 625 aaKnown RBP25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 KLHL34Q8N239 644 aa25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 ZBTB3Q9H5J0 574 aa25.24■■□□□ 1.63
SHKBP1-221ENST00000599833 NPM2Q86SE8 214 aaKnown RBP25.23■■□□□ 1.63
SHKBP1-221ENST00000599833 CDCA7LQ96GN5 454 aa25.23■■□□□ 1.63
SHKBP1-221ENST00000599833 CACNA1FO60840 1977 aa25.23■■□□□ 1.63
SHKBP1-221ENST00000599833 DLEC1Q9Y238 1755 aa25.23■■□□□ 1.63
SHKBP1-221ENST00000599833 UBN2Q6ZU65 1347 aa25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 GOLGA2Q08379 1002 aa25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 SLFN5Q08AF3 891 aa25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 GIGYF2Q6Y7W6 1299 aaKnown RBP25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 MYH16Q9H6N6 1097 aa25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 COL11A2P13942 1736 aaPredicted RBP25.22■■□□□ 1.63
SHKBP1-221ENST00000599833 KCNA3P22001 575 aa25.21■■□□□ 1.63
SHKBP1-221ENST00000599833 PRR5LQ6MZQ0 368 aa25.21■■□□□ 1.63
SHKBP1-221ENST00000599833 KIF6Q6ZMV9 814 aa25.21■■□□□ 1.63
SHKBP1-221ENST00000599833 PHAXQ9H814 394 aaKnown RBP25.21■■□□□ 1.63
SHKBP1-221ENST00000599833 ZNF652Q9Y2D9 606 aa25.21■■□□□ 1.63
SHKBP1-221ENST00000599833 ZNF34Q8IZ26 560 aa25.2■■□□□ 1.62
SHKBP1-221ENST00000599833 SETDB2Q96T68 719 aa25.2■■□□□ 1.62
SHKBP1-221ENST00000599833 HYPKQ9NX55 129 aa25.2■■□□□ 1.62
SHKBP1-221ENST00000599833 AIMP1Q12904 312 aaKnown RBP25.19■■□□□ 1.62
SHKBP1-221ENST00000599833 CCDC30Q5VVM6 783 aa25.19■■□□□ 1.62
SHKBP1-221ENST00000599833 NIP7Q9Y221 180 aaKnown RBP eCLIP25.19■■□□□ 1.62
SHKBP1-221ENST00000599833 E9PSI1 815 aa25.18■■□□□ 1.62
SHKBP1-221ENST00000599833 TGFB2P61812 414 aa25.18■■□□□ 1.62
SHKBP1-221ENST00000599833 TNRC6CQ9HCJ0 1690 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-221ENST00000599833 TCERG1O14776 1098 aaKnown RBP25.16■■□□□ 1.62
SHKBP1-221ENST00000599833 DPEP1P16444 411 aa25.16■■□□□ 1.62
SHKBP1-221ENST00000599833 PLBD2Q8NHP8 589 aa25.16■■□□□ 1.62
SHKBP1-221ENST00000599833 IBTKQ9P2D0 1353 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-221ENST00000599833 A0A0G2JLW4 131 aa25.15■■□□□ 1.62
SHKBP1-221ENST00000599833 YBX3P16989 372 aaKnown RBP eCLIP25.15■■□□□ 1.62
SHKBP1-221ENST00000599833 G2E3Q7L622 706 aa25.15■■□□□ 1.62
SHKBP1-221ENST00000599833 CCDC24Q8N4L8 307 aa25.15■■□□□ 1.62
SHKBP1-221ENST00000599833 GPTP24298 496 aa25.13■■□□□ 1.61
SHKBP1-221ENST00000599833 TCIRG1Q13488 830 aa25.13■■□□□ 1.61
SHKBP1-221ENST00000599833 SUSD4Q5VX71 490 aa25.13■■□□□ 1.61
SHKBP1-221ENST00000599833 ANKRD13DQ6ZTN6 518 aa25.13■■□□□ 1.61
SHKBP1-221ENST00000599833 ABCC12Q96J65 1359 aa25.13■■□□□ 1.61
SHKBP1-221ENST00000599833 ARFGEF1Q9Y6D6 1849 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 NTSR2O95665 410 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 CHRNA5P30532 468 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 CNBD1Q8NA66 436 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 ISCA1Q9BUE6 129 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 ADCY9O60503 1353 aa25.12■■□□□ 1.61
SHKBP1-221ENST00000599833 NBPF5PQ86XG9 351 aaPredicted RBP25.11■■□□□ 1.61
SHKBP1-221ENST00000599833 BRIP1Q9BX63 1249 aa25.11■■□□□ 1.61
SHKBP1-221ENST00000599833 CHMP4AQ9BY43 222 aa25.11■■□□□ 1.61
SHKBP1-221ENST00000599833 RIC1Q4ADV7 1423 aa25.11■■□□□ 1.61
SHKBP1-221ENST00000599833 KLRG2A4D1S0 409 aaPredicted RBP25.1■■□□□ 1.61
SHKBP1-221ENST00000599833 SLC4A2P04920 1241 aa25.1■■□□□ 1.61
SHKBP1-221ENST00000599833 NLRP10Q86W26 655 aa25.1■■□□□ 1.61
SHKBP1-221ENST00000599833 HNRNPUQ00839 825 aaKnown RBP eCLIP25.09■■□□□ 1.61
SHKBP1-221ENST00000599833 PARP10Q53GL7 1025 aa25.08■■□□□ 1.61
SHKBP1-221ENST00000599833 HSP90AB3PQ58FF7 597 aa25.08■■□□□ 1.61
SHKBP1-221ENST00000599833 TPTE2Q6XPS3 522 aa25.08■■□□□ 1.61
SHKBP1-221ENST00000599833 LAMB2P55268 1798 aa25.08■■□□□ 1.6
SHKBP1-221ENST00000599833 DDX60Q8IY21 1712 aaKnown RBP25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 FAM177BA6PVY3 158 aa25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 ERFEQ4G0M1 354 aa25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 NUTM1Q86Y26 1132 aa25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 STK31Q9BXU1 1019 aa25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 WWC3Q9ULE0 1092 aa25.07■■□□□ 1.6
SHKBP1-221ENST00000599833 TRIM28Q13263 835 aaKnown RBP25.06■■□□□ 1.6
SHKBP1-221ENST00000599833 FLIIQ13045 1269 aa25.05■■□□□ 1.6
SHKBP1-221ENST00000599833 PI4KAP2A4QPH2 592 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 ATP5J2-PTCD1G3V325 749 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 ST5P78524 1137 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 KSR2Q6VAB6 950 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 C2CD5Q86YS7 1000 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 SYNE4Q8N205 404 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 PI4KAP1Q8N8J0 262 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 NYXQ9GZU5 481 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 ZBED9Q6R2W3 1325 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 CACNA1SQ13698 1873 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms