RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZC3H4Q9UPT8 1303 aaKnown RBP9□□□□□ -0.97
VPS53-213ENST00000572334 GLTPD2A6NH11 291 aa8.99□□□□□ -0.97
VPS53-213ENST00000572334 HTATSF1O43719 755 aaKnown RBP8.99□□□□□ -0.97
VPS53-213ENST00000572334 LMNB1P20700 586 aa8.99□□□□□ -0.97
VPS53-213ENST00000572334 IFFO2Q5TF58 517 aa8.99□□□□□ -0.97
VPS53-213ENST00000572334 DZIP3Q86Y13 1208 aaKnown RBP8.99□□□□□ -0.97
VPS53-213ENST00000572334 C21orf2O43822 256 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 SNRPA1P09661 255 aaKnown RBP8.98□□□□□ -0.97
VPS53-213ENST00000572334 SRGNP10124 158 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 PDE6BP35913 854 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 FSTL1Q12841 308 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 C7orf43Q8WVR3 580 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 ZNF622Q969S3 477 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS53-213ENST00000572334 SETDB2Q96T68 719 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 MIS18AQ9NYP9 233 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 NUDCQ9Y266 331 aa8.98□□□□□ -0.97
VPS53-213ENST00000572334 SNED1Q8TER0 1413 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 KLRG2A4D1S0 409 aaPredicted RBP8.97□□□□□ -0.97
VPS53-213ENST00000572334 TAF7Q15545 349 aaPredicted RBP8.97□□□□□ -0.97
VPS53-213ENST00000572334 HLFQ16534 295 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 STYK1Q6J9G0 422 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 CLEC4GQ6UXB4 293 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 CNBD1Q8NA66 436 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 ZNF219Q9P2Y4 722 aaPredicted RBP8.97□□□□□ -0.97
VPS53-213ENST00000572334 PDZRN3Q9UPQ7 1066 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 LTBP3Q9NS15 1303 aa8.97□□□□□ -0.97
VPS53-213ENST00000572334 SCN4AP35499 1836 aa8.96□□□□□ -0.97
VPS53-213ENST00000572334 HOXD11P31277 338 aaPredicted RBP8.96□□□□□ -0.98
VPS53-213ENST00000572334 PRPF40BQ6NWY9 871 aaKnown RBP8.96□□□□□ -0.98
VPS53-213ENST00000572334 JMYQ8N9B5 988 aa8.96□□□□□ -0.98
VPS53-213ENST00000572334 RTF1Q92541 710 aaKnown RBP8.96□□□□□ -0.98
VPS53-213ENST00000572334 THUMPD2Q9BTF0 503 aaKnown RBP8.96□□□□□ -0.98
VPS53-213ENST00000572334 LAMB2P55268 1798 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 ADAMTSL1Q8N6G6 1762 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 RGL2O15211 777 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 VEGFAP15692 232 aaPredicted RBP8.95□□□□□ -0.98
VPS53-213ENST00000572334 EIF4A1P60842 406 aaKnown RBP8.95□□□□□ -0.98
VPS53-213ENST00000572334 OLFM4Q6UX06 510 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 C16orf71Q8IYS4 520 aaPredicted RBP8.95□□□□□ -0.98
VPS53-213ENST00000572334 SMC1BQ8NDV3 1235 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 KLRG1Q96E93 195 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 MASTLQ96GX5 879 aa8.95□□□□□ -0.98
VPS53-213ENST00000572334 COL4A5P29400 1685 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 ANKRD36CQ5JPF3 1778 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 ST5P78524 1137 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 NFE2L2Q16236 605 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 TTLL7Q6ZT98 887 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 LRP10Q7Z4F1 713 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 NBPF5PQ86XG9 351 aaPredicted RBP8.94□□□□□ -0.98
VPS53-213ENST00000572334 CNKSR1Q969H4 720 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 NIP7Q9Y221 180 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS53-213ENST00000572334 ABCC12Q96J65 1359 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 TAF1P21675 1872 aa8.94□□□□□ -0.98
VPS53-213ENST00000572334 POTEIP0CG38 1075 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 POTEJP0CG39 1038 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 ERFEQ4G0M1 354 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 SLC51AQ86UW1 340 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 TAOK3Q9H2K8 898 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 UBN2Q6ZU65 1347 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 LTBP1Q14766 1721 aa8.93□□□□□ -0.98
VPS53-213ENST00000572334 MAP3K15Q6ZN16 1313 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 DDNO94850 711 aaPredicted RBP8.92□□□□□ -0.98
VPS53-213ENST00000572334 NPR1P16066 1061 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 ZEB1P37275 1124 aaPredicted RBP8.92□□□□□ -0.98
VPS53-213ENST00000572334 PDIA6Q15084 440 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 CRY2Q49AN0 593 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 TPTE2Q6XPS3 522 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 ZNF652Q9Y2D9 606 aa8.92□□□□□ -0.98
VPS53-213ENST00000572334 RIC1Q4ADV7 1423 aa8.91□□□□□ -0.98
VPS53-213ENST00000572334 FAM177BA6PVY3 158 aa8.91□□□□□ -0.98
VPS53-213ENST00000572334 ERVV-1B6SEH8 477 aa8.91□□□□□ -0.98
VPS53-213ENST00000572334 NPM2Q86SE8 214 aaKnown RBP8.91□□□□□ -0.98
VPS53-213ENST00000572334 NUTM1Q86Y26 1132 aa8.91□□□□□ -0.98
VPS53-213ENST00000572334 NGEFQ8N5V2 710 aa8.91□□□□□ -0.98
VPS53-213ENST00000572334 IBTKQ9P2D0 1353 aaPredicted RBP8.9□□□□□ -0.98
VPS53-213ENST00000572334 ZNF541Q9H0D2 1346 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 NPHP1O15259 732 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 FKBP4Q02790 459 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS53-213ENST00000572334 PROSER3Q2NL68 480 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 CCDC93Q567U6 631 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 SOGA3Q5TF21 947 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 SUSD4Q5VX71 490 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 DPY19L2Q6NUT2 758 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 C3orf67Q6ZVT6 689 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 ZNF34Q8IZ26 560 aa8.9□□□□□ -0.98
VPS53-213ENST00000572334 PNISRQ8TF01 805 aaKnown RBP8.9□□□□□ -0.98
VPS53-213ENST00000572334 L3MBTL3Q96JM7 780 aaPredicted RBP8.9□□□□□ -0.98
VPS53-213ENST00000572334 ZNF277Q9NRM2 450 aaPredicted RBP8.9□□□□□ -0.98
VPS53-213ENST00000572334 RRP7AQ9Y3A4 280 aaKnown RBP8.9□□□□□ -0.98
VPS53-213ENST00000572334 DDX60Q8IY21 1712 aaKnown RBP8.89□□□□□ -0.99
VPS53-213ENST00000572334 FZD9O00144 591 aa8.89□□□□□ -0.99
VPS53-213ENST00000572334 NTSR2O95665 410 aa8.89□□□□□ -0.99
VPS53-213ENST00000572334 MYL6BP14649 208 aa8.89□□□□□ -0.99
VPS53-213ENST00000572334 GPTP24298 496 aa8.89□□□□□ -0.99
VPS53-213ENST00000572334 HOXA10P31260 410 aaPredicted RBP8.89□□□□□ -0.99
VPS53-213ENST00000572334 COL13A1Q5TAT6 717 aaPredicted RBP8.89□□□□□ -0.99
VPS53-213ENST00000572334 ZBTB3Q9H5J0 574 aa8.89□□□□□ -0.99
VPS53-213ENST00000572334 ERBB4Q15303 1308 aa8.88□□□□□ -0.99
VPS53-213ENST00000572334 PASKQ96RG2 1323 aa8.88□□□□□ -0.99
VPS53-213ENST00000572334 ANXA1P04083 346 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms