RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MYH16Q9H6N6 1097 aa26.68■■□□□ 1.86
VPS53-210ENST00000571456 MBIPQ9NS73 344 aa26.68■■□□□ 1.86
VPS53-210ENST00000571456 ZC3H4Q9UPT8 1303 aaKnown RBP26.67■■□□□ 1.86
VPS53-210ENST00000571456 VEGFAP15692 232 aaPredicted RBP26.67■■□□□ 1.86
VPS53-210ENST00000571456 DNAJC10Q8IXB1 793 aa26.67■■□□□ 1.86
VPS53-210ENST00000571456 CYP19A1P11511 503 aaPredicted RBP26.66■■□□□ 1.86
VPS53-210ENST00000571456 GOLGA2Q08379 1002 aa26.66■■□□□ 1.86
VPS53-210ENST00000571456 MYH14Q7Z406 1995 aaKnown RBP26.66■■□□□ 1.86
VPS53-210ENST00000571456 CRKLP46109 303 aaKnown RBP26.64■■□□□ 1.86
VPS53-210ENST00000571456 ERBB4Q15303 1308 aa26.64■■□□□ 1.85
VPS53-210ENST00000571456 E9PSI1 815 aa26.63■■□□□ 1.85
VPS53-210ENST00000571456 RPS6KA4O75676 772 aa26.63■■□□□ 1.85
VPS53-210ENST00000571456 HNRNPUQ00839 825 aaKnown RBP eCLIP26.62■■□□□ 1.85
VPS53-210ENST00000571456 GLTPD2A6NH11 291 aa26.61■■□□□ 1.85
VPS53-210ENST00000571456 CCDC88AQ3V6T2 1871 aa26.6■■□□□ 1.85
VPS53-210ENST00000571456 CHRNA5P30532 468 aa26.6■■□□□ 1.85
VPS53-210ENST00000571456 FANCIQ9NVI1 1328 aa26.59■■□□□ 1.85
VPS53-210ENST00000571456 IL6STP40189 918 aaPredicted RBP26.58■■□□□ 1.85
VPS53-210ENST00000571456 RASSF7Q02833 373 aa26.58■■□□□ 1.85
VPS53-210ENST00000571456 INTS5Q6P9B9 1019 aaKnown RBP26.58■■□□□ 1.85
VPS53-210ENST00000571456 NPM2Q86SE8 214 aaKnown RBP26.58■■□□□ 1.85
VPS53-210ENST00000571456 USP16Q9Y5T5 823 aa26.58■■□□□ 1.85
VPS53-210ENST00000571456 ZBED9Q6R2W3 1325 aa26.58■■□□□ 1.85
VPS53-210ENST00000571456 LMNB1P20700 586 aa26.57■■□□□ 1.84
VPS53-210ENST00000571456 A0A087WZG4 1122 aa26.56■■□□□ 1.84
VPS53-210ENST00000571456 DDR1Q08345 913 aa26.56■■□□□ 1.84
VPS53-210ENST00000571456 DUSP27Q5VZP5 1158 aa26.56■■□□□ 1.84
VPS53-210ENST00000571456 FKBP8Q14318 412 aa26.55■■□□□ 1.84
VPS53-210ENST00000571456 TSR2Q969E8 191 aaKnown RBP26.55■■□□□ 1.84
VPS53-210ENST00000571456 TIAM2Q8IVF5 1701 aa26.55■■□□□ 1.84
VPS53-210ENST00000571456 SLFN5Q08AF3 891 aa26.54■■□□□ 1.84
VPS53-210ENST00000571456 PRDM10Q9NQV6 1147 aa26.54■■□□□ 1.84
VPS53-210ENST00000571456 ZBTB1Q9Y2K1 713 aa26.54■■□□□ 1.84
VPS53-210ENST00000571456 CACNA1FO60840 1977 aa26.54■■□□□ 1.84
VPS53-210ENST00000571456 PRAMEF22A3QJZ6 481 aa26.53■■□□□ 1.84
VPS53-210ENST00000571456 EIF5P55010 431 aaKnown RBP26.53■■□□□ 1.84
VPS53-210ENST00000571456 SRP68Q9UHB9 627 aaKnown RBP26.53■■□□□ 1.84
VPS53-210ENST00000571456 FOXN1O15353 648 aa26.52■■□□□ 1.84
VPS53-210ENST00000571456 CREBZFQ9NS37 354 aa26.52■■□□□ 1.84
VPS53-210ENST00000571456 MKRN1Q9UHC7 482 aaKnown RBP26.52■■□□□ 1.84
VPS53-210ENST00000571456 COL15A1P39059 1388 aa26.51■■□□□ 1.83
VPS53-210ENST00000571456 USP42Q9H9J4 1324 aaKnown RBP26.51■■□□□ 1.83
VPS53-210ENST00000571456 CANXP27824 592 aaKnown RBP26.51■■□□□ 1.83
VPS53-210ENST00000571456 HDGFL1Q5TGJ6 251 aa26.51■■□□□ 1.83
VPS53-210ENST00000571456 TRMT2AQ8IZ69 625 aaKnown RBP26.51■■□□□ 1.83
VPS53-210ENST00000571456 SPINK5Q9NQ38 1064 aaPredicted RBP26.51■■□□□ 1.83
VPS53-210ENST00000571456 RGL2O15211 777 aa26.5■■□□□ 1.83
VPS53-210ENST00000571456 A1BGP04217 495 aa26.5■■□□□ 1.83
VPS53-210ENST00000571456 TWISTNBQ3B726 338 aaPredicted RBP26.5■■□□□ 1.83
VPS53-210ENST00000571456 C8orf58Q8NAV2 365 aa26.5■■□□□ 1.83
VPS53-210ENST00000571456 DBF4Q9UBU7 674 aaPredicted RBP26.5■■□□□ 1.83
VPS53-210ENST00000571456 POTECB2RU33 542 aa26.49■■□□□ 1.83
VPS53-210ENST00000571456 CT47B1P0C2W7 299 aaPredicted RBP26.49■■□□□ 1.83
VPS53-210ENST00000571456 EIF2S2P20042 333 aaKnown RBP26.49■■□□□ 1.83
VPS53-210ENST00000571456 CCDC30Q5VVM6 783 aa26.49■■□□□ 1.83
VPS53-210ENST00000571456 ZNF428Q96B54 188 aa26.49■■□□□ 1.83
VPS53-210ENST00000571456 POLRMTO00411 1230 aaKnown RBP26.48■■□□□ 1.83
VPS53-210ENST00000571456 KRT24Q2M2I5 525 aa26.48■■□□□ 1.83
VPS53-210ENST00000571456 DDX21Q9NR30 783 aaKnown RBP eCLIP26.48■■□□□ 1.83
VPS53-210ENST00000571456 EXOSC9Q06265 439 aaKnown RBP26.47■■□□□ 1.83
VPS53-210ENST00000571456 DLEC1Q9Y238 1755 aa26.47■■□□□ 1.83
VPS53-210ENST00000571456 TM4SF1P30408 202 aa26.46■■□□□ 1.83
VPS53-210ENST00000571456 PCDH10Q9P2E7 1040 aa26.46■■□□□ 1.83
VPS53-210ENST00000571456 NARFQ9UHQ1 456 aa26.46■■□□□ 1.83
VPS53-210ENST00000571456 AFDNP55196 1824 aaKnown RBP26.46■■□□□ 1.83
VPS53-210ENST00000571456 NBPF26B4DH59 902 aa26.45■■□□□ 1.82
VPS53-210ENST00000571456 ZPR1O75312 459 aa26.45■■□□□ 1.82
VPS53-210ENST00000571456 CTCFP49711 727 aaPredicted RBP26.45■■□□□ 1.82
VPS53-210ENST00000571456 DPY19L2Q6NUT2 758 aa26.45■■□□□ 1.82
VPS53-210ENST00000571456 NBPF10Q6P3W6 841 aaKnown RBP26.45■■□□□ 1.82
VPS53-210ENST00000571456 NBPF15Q8N660 670 aa26.45■■□□□ 1.82
VPS53-210ENST00000571456 HYPKQ9NX55 129 aa26.45■■□□□ 1.82
VPS53-210ENST00000571456 ELL2O00472 640 aaPredicted RBP26.44■■□□□ 1.82
VPS53-210ENST00000571456 STK31Q9BXU1 1019 aa26.44■■□□□ 1.82
VPS53-210ENST00000571456 DICER1Q9UPY3 1922 aaKnown RBP26.43■■□□□ 1.82
VPS53-210ENST00000571456 VAMP4O75379 141 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 CHADLQ6NUI6 762 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 TSPYL6Q8N831 410 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 AIDAQ96BJ3 306 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 CDCA7LQ96GN5 454 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 CNTNAP1P78357 1384 aa26.43■■□□□ 1.82
VPS53-210ENST00000571456 PDIA6Q15084 440 aa26.42■■□□□ 1.82
VPS53-210ENST00000571456 FAM161AQ3B820 660 aa26.42■■□□□ 1.82
VPS53-210ENST00000571456 TTLL6Q8N841 843 aa26.42■■□□□ 1.82
VPS53-210ENST00000571456 SCN7AQ01118 1682 aa26.41■■□□□ 1.82
VPS53-210ENST00000571456 NFKBIEO00221 500 aa26.4■■□□□ 1.82
VPS53-210ENST00000571456 DZIP3Q86Y13 1208 aaKnown RBP26.4■■□□□ 1.82
VPS53-210ENST00000571456 CHPF2Q9P2E5 772 aa26.4■■□□□ 1.82
VPS53-210ENST00000571456 ZNF652Q9Y2D9 606 aa26.4■■□□□ 1.82
VPS53-210ENST00000571456 ZNF330Q9Y3S2 320 aaPredicted RBP26.4■■□□□ 1.82
VPS53-210ENST00000571456 BCORQ6W2J9 1755 aa26.4■■□□□ 1.82
VPS53-210ENST00000571456 ERVV-1B6SEH8 477 aa26.39■■□□□ 1.82
VPS53-210ENST00000571456 MYL6BP14649 208 aa26.39■■□□□ 1.82
VPS53-210ENST00000571456 CLEC4GQ6UXB4 293 aa26.39■■□□□ 1.82
VPS53-210ENST00000571456 KIF6Q6ZMV9 814 aa26.39■■□□□ 1.82
VPS53-210ENST00000571456 LRP10Q7Z4F1 713 aa26.38■■□□□ 1.81
VPS53-210ENST00000571456 NRXN2Q9P2S2 1712 aa26.38■■□□□ 1.81
VPS53-210ENST00000571456 USPL1Q5W0Q7 1092 aa26.37■■□□□ 1.81
VPS53-210ENST00000571456 NECTIN2Q92692 538 aa26.37■■□□□ 1.81
VPS53-210ENST00000571456 ABHD8Q96I13 439 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms