RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 RTF1Q92541 710 aaKnown RBP14.08□□□□□ -0.16
SHMT2-215ENST00000554656 ZNF622Q969S3 477 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHMT2-215ENST00000554656 SETDB2Q96T68 719 aa14.08□□□□□ -0.16
SHMT2-215ENST00000554656 HTATSF1O43719 755 aaKnown RBP14.07□□□□□ -0.16
SHMT2-215ENST00000554656 C21orf2O43822 256 aa14.07□□□□□ -0.16
SHMT2-215ENST00000554656 PDE6BP35913 854 aa14.07□□□□□ -0.16
SHMT2-215ENST00000554656 ZNF219Q9P2Y4 722 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-215ENST00000554656 GLTPD2A6NH11 291 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 SRGNP10124 158 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 FSTL1Q12841 308 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 C16orf71Q8IYS4 520 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-215ENST00000554656 PLEKHF1Q96S99 279 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 MIS18AQ9NYP9 233 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 PDZRN3Q9UPQ7 1066 aa14.06□□□□□ -0.16
SHMT2-215ENST00000554656 POTECB2RU33 542 aa14.05□□□□□ -0.16
SHMT2-215ENST00000554656 PRPF40BQ6NWY9 871 aaKnown RBP14.05□□□□□ -0.16
SHMT2-215ENST00000554656 ST5P78524 1137 aa14.04□□□□□ -0.16
SHMT2-215ENST00000554656 TAF7Q15545 349 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-215ENST00000554656 IFFO2Q5TF58 517 aa14.04□□□□□ -0.16
SHMT2-215ENST00000554656 STYK1Q6J9G0 422 aa14.04□□□□□ -0.16
SHMT2-215ENST00000554656 CLEC4GQ6UXB4 293 aa14.04□□□□□ -0.16
SHMT2-215ENST00000554656 THUMPD2Q9BTF0 503 aaKnown RBP14.04□□□□□ -0.16
SHMT2-215ENST00000554656 LTBP3Q9NS15 1303 aa14.04□□□□□ -0.16
SHMT2-215ENST00000554656 HLFQ16534 295 aa14.03□□□□□ -0.16
SHMT2-215ENST00000554656 NPM2Q86SE8 214 aaKnown RBP14.03□□□□□ -0.16
SHMT2-215ENST00000554656 NBPF5PQ86XG9 351 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-215ENST00000554656 VEGFAP15692 232 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-215ENST00000554656 NFE2L2Q16236 605 aa14.02□□□□□ -0.17
SHMT2-215ENST00000554656 C7orf43Q8WVR3 580 aa14.02□□□□□ -0.17
SHMT2-215ENST00000554656 CNKSR1Q969H4 720 aa14.02□□□□□ -0.17
SHMT2-215ENST00000554656 MASTLQ96GX5 879 aa14.02□□□□□ -0.17
SHMT2-215ENST00000554656 NIP7Q9Y221 180 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT2-215ENST00000554656 ABCC12Q96J65 1359 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 KLRG2A4D1S0 409 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-215ENST00000554656 RGL2O15211 777 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 NPHP1O15259 732 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 EIF4A1P60842 406 aaKnown RBP14.01□□□□□ -0.17
SHMT2-215ENST00000554656 ERFEQ4G0M1 354 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 SMC1BQ8NDV3 1235 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 TAOK3Q9H2K8 898 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 ZNF652Q9Y2D9 606 aa14.01□□□□□ -0.17
SHMT2-215ENST00000554656 SNED1Q8TER0 1413 aa14□□□□□ -0.17
SHMT2-215ENST00000554656 FAM177BA6PVY3 158 aa14□□□□□ -0.17
SHMT2-215ENST00000554656 OLFM4Q6UX06 510 aa14□□□□□ -0.17
SHMT2-215ENST00000554656 KLRG1Q96E93 195 aa14□□□□□ -0.17
SHMT2-215ENST00000554656 PCNTO95613 3336 aa13.99□□□□□ -0.17
SHMT2-215ENST00000554656 TTLL7Q6ZT98 887 aa13.99□□□□□ -0.17
SHMT2-215ENST00000554656 JMYQ8N9B5 988 aa13.99□□□□□ -0.17
SHMT2-215ENST00000554656 NPR1P16066 1061 aa13.98□□□□□ -0.17
SHMT2-215ENST00000554656 NGEFQ8N5V2 710 aa13.98□□□□□ -0.17
SHMT2-215ENST00000554656 SCN4AP35499 1836 aa13.98□□□□□ -0.17
SHMT2-215ENST00000554656 ANKRD36CQ5JPF3 1778 aa13.98□□□□□ -0.17
SHMT2-215ENST00000554656 COL4A5P29400 1685 aa13.98□□□□□ -0.17
SHMT2-215ENST00000554656 MAP3K15Q6ZN16 1313 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 UBN2Q6ZU65 1347 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 LAMB2P55268 1798 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 DDNO94850 711 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-215ENST00000554656 POTEIP0CG38 1075 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 POTEJP0CG39 1038 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 DDX10Q13206 875 aaKnown RBP13.97□□□□□ -0.17
SHMT2-215ENST00000554656 CCDC93Q567U6 631 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 TPTE2Q6XPS3 522 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 SLC51AQ86UW1 340 aa13.97□□□□□ -0.17
SHMT2-215ENST00000554656 PNISRQ8TF01 805 aaKnown RBP13.97□□□□□ -0.17
SHMT2-215ENST00000554656 ADAMTSL1Q8N6G6 1762 aa13.96□□□□□ -0.17
SHMT2-215ENST00000554656 SOGA3Q5TF21 947 aa13.96□□□□□ -0.17
SHMT2-215ENST00000554656 DPY19L2Q6NUT2 758 aa13.96□□□□□ -0.17
SHMT2-215ENST00000554656 LRP10Q7Z4F1 713 aa13.96□□□□□ -0.17
SHMT2-215ENST00000554656 NUTM1Q86Y26 1132 aa13.96□□□□□ -0.17
SHMT2-215ENST00000554656 RRP7AQ9Y3A4 280 aaKnown RBP13.96□□□□□ -0.17
SHMT2-215ENST00000554656 RIC1Q4ADV7 1423 aa13.96□□□□□ -0.18
SHMT2-215ENST00000554656 ZNF541Q9H0D2 1346 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 MAPK8IP3Q9UPT6 1336 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 ERVV-1B6SEH8 477 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 NEFMP07197 916 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 MYL6BP14649 208 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 FKBP4Q02790 459 aaKnown RBP eCLIP13.95□□□□□ -0.18
SHMT2-215ENST00000554656 CRY2Q49AN0 593 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
SHMT2-215ENST00000554656 ZNF277Q9NRM2 450 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-215ENST00000554656 IBTKQ9P2D0 1353 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-215ENST00000554656 GPTP24298 496 aa13.94□□□□□ -0.18
SHMT2-215ENST00000554656 LTBP1Q14766 1721 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 NTSR2O95665 410 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 PDIA6Q15084 440 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 PROSER3Q2NL68 480 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 SUSD4Q5VX71 490 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 C3orf67Q6ZVT6 689 aa13.93□□□□□ -0.18
SHMT2-215ENST00000554656 L3MBTL3Q96JM7 780 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-215ENST00000554656 ERBB4Q15303 1308 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 ANXA1P04083 346 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 KIF6Q6ZMV9 814 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 ZNF34Q8IZ26 560 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 NYXQ9GZU5 481 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 TSPYL4Q9UJ04 414 aa13.92□□□□□ -0.18
SHMT2-215ENST00000554656 GTF2E1P29083 439 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-215ENST00000554656 TMPOP42166 694 aaKnown RBP13.91□□□□□ -0.18
SHMT2-215ENST00000554656 RIPK4P57078 832 aa13.91□□□□□ -0.18
SHMT2-215ENST00000554656 CHADLQ6NUI6 762 aa13.91□□□□□ -0.18
SHMT2-215ENST00000554656 GIGYF2Q6Y7W6 1299 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms