RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FOXD4L5Q5VV16 416 aaPredicted RBP13.57□□□□□ -0.24
CUX1-212ENST00000547394 LRP10Q7Z4F1 713 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 AACSQ86V21 672 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 FOXD4L4Q8WXT5 416 aaPredicted RBP13.57□□□□□ -0.24
CUX1-212ENST00000547394 CHAMP1Q96JM3 812 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.247e-7■■□□□ 13.1
CUX1-212ENST00000547394 C5P01031 1676 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 CPDO75976 1380 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 NEXNQ0ZGT2 675 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 PKP1Q13835 747 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 CWC27Q6UX04 472 aaKnown RBP13.56□□□□□ -0.24
CUX1-212ENST00000547394 CHMP3Q9Y3E7 222 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 ALDH1L1O75891 902 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 REC8O95072 547 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 GCKRQ14397 625 aa13.56□□□□□ -0.24
CUX1-212ENST00000547394 ZGPATQ8N5A5 531 aaKnown RBP13.56□□□□□ -0.24
CUX1-212ENST00000547394 SASH1O94885 1247 aa13.55□□□□□ -0.24
CUX1-212ENST00000547394 SYTL4Q96C24 671 aaPredicted RBP13.55□□□□□ -0.24
CUX1-212ENST00000547394 COL5A2P05997 1499 aaPredicted RBP13.55□□□□□ -0.24
CUX1-212ENST00000547394 NCOA3Q9Y6Q9 1424 aa13.55□□□□□ -0.24
CUX1-212ENST00000547394 SSFA2P28290 1259 aa13.55□□□□□ -0.24
CUX1-212ENST00000547394 NEK4P51957 841 aa13.55□□□□□ -0.24
CUX1-212ENST00000547394 TNPO1Q92973 898 aaKnown RBP13.55□□□□□ -0.24
CUX1-212ENST00000547394 CCDC85AQ96PX6 553 aaPredicted RBP13.55□□□□□ -0.24
CUX1-212ENST00000547394 STAP2Q9UGK3 403 aa13.55□□□□□ -0.24
CUX1-212ENST00000547394 RAB11FIP3O75154 756 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 ADAMTS2O95450 1211 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 EDC3Q96F86 508 aaKnown RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 METTL22Q9BUU2 404 aaPredicted RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 ASAP1Q9ULH1 1129 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 OVOS2A0A0G2JMS6 1433 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 PCDH11XQ9BZA7 1347 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 PCDH11YQ9BZA8 1340 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 A0A087WZG4 1122 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 MCM4P33991 863 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 CLASRPQ8N2M8 674 aaKnown RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 EAF2Q96CJ1 260 aaPredicted RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 SIPA1L3O60292 1781 aaPredicted RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 CHGBP05060 677 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 IFIT2P09913 472 aaKnown RBP13.54□□□□□ -0.24
CUX1-212ENST00000547394 RABEP1Q15276 862 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 CHMP4AQ9BY43 222 aa13.54□□□□□ -0.24
CUX1-212ENST00000547394 SCN11AQ9UI33 1791 aa13.53□□□□□ -0.24
CUX1-212ENST00000547394 G3BP1Q13283 466 aaKnown RBP eCLIP13.53□□□□□ -0.24
CUX1-212ENST00000547394 BOLA2Q9H3K6 86 aa13.53□□□□□ -0.24
CUX1-212ENST00000547394 CRYBG1Q9Y4K1 1723 aa13.52□□□□□ -0.24
CUX1-212ENST00000547394 CPA1P15085 419 aa13.52□□□□□ -0.24
CUX1-212ENST00000547394 DDIT3P35638 169 aa13.52□□□□□ -0.24
CUX1-212ENST00000547394 AK9Q5TCS8 1911 aa13.52□□□□□ -0.25
CUX1-212ENST00000547394 CARD10Q9BWT7 1032 aa13.52□□□□□ -0.25
CUX1-212ENST00000547394 BRPF3Q9ULD4 1205 aa13.51□□□□□ -0.25
CUX1-212ENST00000547394 PRKCSHP14314 528 aaPredicted RBP13.51□□□□□ -0.25
CUX1-212ENST00000547394 MTX1Q13505 466 aa13.51□□□□□ -0.25
CUX1-212ENST00000547394 NUTM2BA6NNL0 878 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 NUTM2EB1AL46 878 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 FOXD4L6Q3SYB3 417 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 LMBR1LQ6UX01 489 aa13.5□□□□□ -0.25
CUX1-212ENST00000547394 FOXD4L3Q6VB84 417 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 NUTM2AQ8IVF1 878 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 TMOD3Q9NYL9 352 aa13.5□□□□□ -0.25
CUX1-212ENST00000547394 DNAJC10Q8IXB1 793 aa13.5□□□□□ -0.25
CUX1-212ENST00000547394 PIGBQ92521 554 aa13.5□□□□□ -0.25
CUX1-212ENST00000547394 ZNF594Q96JF6 807 aaPredicted RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 RTN4Q9NQC3 1192 aaKnown RBP13.5□□□□□ -0.25
CUX1-212ENST00000547394 PIP4K2BP78356 416 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 TFCP2Q12800 502 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 CNTROBQ8N137 903 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 SYNE4Q8N205 404 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 FAM227BQ96M60 508 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 ECHDC1Q9NTX5 307 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 ST18O60284 1047 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 COL9A3Q14050 684 aaPredicted RBP13.49□□□□□ -0.25
CUX1-212ENST00000547394 HSP90AB4PQ58FF6 505 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 RASEFQ8IZ41 740 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 IL27Q8NEV9 243 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 ADAMTS7Q9UKP4 1686 aa13.49□□□□□ -0.25
CUX1-212ENST00000547394 PTH1RQ03431 593 aa13.48□□□□□ -0.25
CUX1-212ENST00000547394 SLFNL1Q499Z3 407 aa13.48□□□□□ -0.25
CUX1-212ENST00000547394 DIAPH3Q9NSV4 1193 aa13.48□□□□□ -0.25
CUX1-212ENST00000547394 TRAK2O60296 914 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 GLRX3O76003 335 aaKnown RBP13.47□□□□□ -0.25
CUX1-212ENST00000547394 PLBD2Q8NHP8 589 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 UTYO14607 1347 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 N4BP2Q86UW6 1770 aaPredicted RBP13.47□□□□□ -0.25
CUX1-212ENST00000547394 SGSM2O43147 1006 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 GPTP24298 496 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 PTPN12Q05209 780 aaKnown RBP13.47□□□□□ -0.25
CUX1-212ENST00000547394 RAB3GAP1Q15042 981 aa13.47□□□□□ -0.25
CUX1-212ENST00000547394 ERVV-2B6SEH9 535 aa13.46□□□□□ -0.25
CUX1-212ENST00000547394 TPRNQ4KMQ1 711 aa13.46□□□□□ -0.25
CUX1-212ENST00000547394 TMX3Q96JJ7 454 aa13.46□□□□□ -0.25
CUX1-212ENST00000547394 ACSBG1Q96GR2 724 aa13.46□□□□□ -0.25
CUX1-212ENST00000547394 DNAJC2Q99543 621 aaKnown RBP13.46□□□□□ -0.26
CUX1-212ENST00000547394 DBNLQ9UJU6 430 aaKnown RBP13.46□□□□□ -0.26
CUX1-212ENST00000547394 MRC1P22897 1456 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 RFX5P48382 616 aaPredicted RBP13.45□□□□□ -0.26
CUX1-212ENST00000547394 FAM89AQ96GI7 184 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 DBNDD2Q9BQY9 259 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 LSG1Q9H089 658 aaKnown RBP13.45□□□□□ -0.26
CUX1-212ENST00000547394 PKD1L3Q7Z443 1732 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms