RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 AMOTQ4VCS5 1084 aa21.38■■□□□ 1.01
CLSTN3-216ENST00000545663 CST9Q5W186 159 aa21.38■■□□□ 1.01
CLSTN3-216ENST00000545663 AEBP1Q8IUX7 1158 aa21.38■■□□□ 1.01
CLSTN3-216ENST00000545663 CASP8AP2Q9UKL3 1982 aa21.37■■□□□ 1.01
CLSTN3-216ENST00000545663 OLFM4Q6UX06 510 aa21.37■■□□□ 1.01
CLSTN3-216ENST00000545663 C7orf43Q8WVR3 580 aa21.37■■□□□ 1.01
CLSTN3-216ENST00000545663 CNKSR1Q969H4 720 aa21.37■■□□□ 1.01
CLSTN3-216ENST00000545663 PDZRN3Q9UPQ7 1066 aa21.37■■□□□ 1.01
CLSTN3-216ENST00000545663 TRAF5O00463 557 aa21.36■■□□□ 1.01
CLSTN3-216ENST00000545663 SLC24A1O60721 1099 aa21.36■■□□□ 1.01
CLSTN3-216ENST00000545663 SRGNP10124 158 aa21.36■■□□□ 1.01
CLSTN3-216ENST00000545663 SOX10P56693 466 aa21.36■■□□□ 1.01
CLSTN3-216ENST00000545663 STYK1Q6J9G0 422 aa21.36■■□□□ 1.01
CLSTN3-216ENST00000545663 LGR6Q9HBX8 967 aa21.34■■□□□ 1.01
CLSTN3-216ENST00000545663 SOGA3Q5TF21 947 aa21.33■■□□□ 1.01
CLSTN3-216ENST00000545663 MAP2K2P36507 400 aa21.32■■□□□ 1
CLSTN3-216ENST00000545663 EIF5P55010 431 aaKnown RBP21.32■■□□□ 1
CLSTN3-216ENST00000545663 PRPF38BQ5VTL8 546 aaKnown RBP21.32■■□□□ 1
CLSTN3-216ENST00000545663 SLC52A2Q9HAB3 445 aa21.32■■□□□ 1
CLSTN3-216ENST00000545663 TBC1D2BQ9UPU7 963 aa21.32■■□□□ 1
CLSTN3-216ENST00000545663 TLL2Q9Y6L7 1015 aa21.32■■□□□ 1
CLSTN3-216ENST00000545663 CACNA1SQ13698 1873 aa21.32■■□□□ 1
CLSTN3-216ENST00000545663 FKBP4Q02790 459 aaKnown RBP eCLIP21.31■■□□□ 1
CLSTN3-216ENST00000545663 CCDC93Q567U6 631 aa21.31■■□□□ 1
CLSTN3-216ENST00000545663 MASTLQ96GX5 879 aa21.31■■□□□ 1
CLSTN3-216ENST00000545663 FZD9O00144 591 aa21.3■■□□□ 1
CLSTN3-216ENST00000545663 CNBD1Q8NA66 436 aa21.29■■□□□ 1
CLSTN3-216ENST00000545663 CA12O43570 354 aa21.28■■□□□ 1
CLSTN3-216ENST00000545663 GPC2Q8N158 579 aa21.28■■□□□ 1
CLSTN3-216ENST00000545663 GJA3Q9Y6H8 435 aa21.28■■□□□ 1
CLSTN3-216ENST00000545663 NPHP1O15259 732 aa21.27■■□□□ 1
CLSTN3-216ENST00000545663 EPS15P42566 896 aa21.27■■□□□ 1
CLSTN3-216ENST00000545663 CIAPIN1Q6FI81 312 aa21.27■■□□□ 1
CLSTN3-216ENST00000545663 ZNF330Q9Y3S2 320 aaPredicted RBP21.27■■□□□ 1
CLSTN3-216ENST00000545663 A0A087WZG4 1122 aa21.26■□□□□ 0.99
CLSTN3-216ENST00000545663 ZIC5Q96T25 663 aa21.26■□□□□ 0.99
CLSTN3-216ENST00000545663 SETDB2Q96T68 719 aa21.26■□□□□ 0.99
CLSTN3-216ENST00000545663 IARSP41252 1262 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-216ENST00000545663 SULT6B1Q6IMI4 303 aa21.25■□□□□ 0.99
CLSTN3-216ENST00000545663 SAPCD2Q86UD0 394 aa21.25■□□□□ 0.99
CLSTN3-216ENST00000545663 SYNE4Q8N205 404 aa21.25■□□□□ 0.99
CLSTN3-216ENST00000545663 SCN11AQ9UI33 1791 aa21.25■□□□□ 0.99
CLSTN3-216ENST00000545663 BRPF1P55201 1214 aaPredicted RBP21.24■□□□□ 0.99
CLSTN3-216ENST00000545663 ST5P78524 1137 aa21.24■□□□□ 0.99
CLSTN3-216ENST00000545663 VSIG10Q8N0Z9 540 aa21.23■□□□□ 0.99
CLSTN3-216ENST00000545663 ARFGEF2Q9Y6D5 1785 aa21.23■□□□□ 0.99
CLSTN3-216ENST00000545663 RNMTO43148 476 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-216ENST00000545663 SCNN1DP51172 638 aa21.22■□□□□ 0.99
CLSTN3-216ENST00000545663 AKAP4Q5JQC9 854 aa21.22■□□□□ 0.99
CLSTN3-216ENST00000545663 STARD3NLO95772 234 aa21.21■□□□□ 0.99
CLSTN3-216ENST00000545663 LMOD1P29536 600 aaPredicted RBP21.21■□□□□ 0.99
CLSTN3-216ENST00000545663 RTKN2Q8IZC4 609 aa21.21■□□□□ 0.99
CLSTN3-216ENST00000545663 CAMTA2O94983 1202 aa21.2■□□□□ 0.98
CLSTN3-216ENST00000545663 CELF2O95319 508 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-216ENST00000545663 NPR1P16066 1061 aa21.2■□□□□ 0.98
CLSTN3-216ENST00000545663 CDCA8Q53HL2 280 aa21.2■□□□□ 0.98
CLSTN3-216ENST00000545663 COL4A5P29400 1685 aa21.2■□□□□ 0.98
CLSTN3-216ENST00000545663 TRPM7Q96QT4 1865 aa21.19■□□□□ 0.98
CLSTN3-216ENST00000545663 SCN7AQ01118 1682 aa21.18■□□□□ 0.98
CLSTN3-216ENST00000545663 JDP2Q8WYK2 163 aa21.18■□□□□ 0.98
CLSTN3-216ENST00000545663 EIF6P56537 245 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-216ENST00000545663 USP50Q70EL3 339 aaPredicted RBP21.17■□□□□ 0.98
CLSTN3-216ENST00000545663 GLIS2Q9BZE0 524 aaPredicted RBP21.17■□□□□ 0.98
CLSTN3-216ENST00000545663 MRC1P22897 1456 aa21.16■□□□□ 0.98
CLSTN3-216ENST00000545663 A1BGP04217 495 aa21.16■□□□□ 0.98
CLSTN3-216ENST00000545663 NBPF5PQ86XG9 351 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-216ENST00000545663 KLRG2A4D1S0 409 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-216ENST00000545663 ZNF496Q96IT1 587 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-216ENST00000545663 ZNF408Q9H9D4 720 aa21.15■□□□□ 0.98
CLSTN3-216ENST00000545663 IL6STP40189 918 aaPredicted RBP21.14■□□□□ 0.97
CLSTN3-216ENST00000545663 SLC51AQ86UW1 340 aa21.14■□□□□ 0.97
CLSTN3-216ENST00000545663 HHIPL1Q96JK4 782 aa21.14■□□□□ 0.97
CLSTN3-216ENST00000545663 PSMD1Q99460 953 aa21.12■□□□□ 0.97
CLSTN3-216ENST00000545663 SNED1Q8TER0 1413 aa21.12■□□□□ 0.97
CLSTN3-216ENST00000545663 FAM177BA6PVY3 158 aa21.11■□□□□ 0.97
CLSTN3-216ENST00000545663 IL13P35225 146 aa21.11■□□□□ 0.97
CLSTN3-216ENST00000545663 PIP4K2AP48426 406 aaPredicted RBP21.11■□□□□ 0.97
CLSTN3-216ENST00000545663 DLK2Q6UY11 383 aa21.11■□□□□ 0.97
CLSTN3-216ENST00000545663 DZIP3Q86Y13 1208 aaKnown RBP21.11■□□□□ 0.97
CLSTN3-216ENST00000545663 UBR2Q8IWV8 1755 aa21.1■□□□□ 0.97
CLSTN3-216ENST00000545663 NOGQ13253 232 aa21.1■□□□□ 0.97
CLSTN3-216ENST00000545663 TTC5Q8N0Z6 440 aa21.1■□□□□ 0.97
CLSTN3-216ENST00000545663 MTHFSDQ2M296 383 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-216ENST00000545663 HEG1Q9ULI3 1381 aa21.09■□□□□ 0.97
CLSTN3-216ENST00000545663 HABP4Q5JVS0 413 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-216ENST00000545663 LARGE2Q8N3Y3 721 aa21.08■□□□□ 0.97
CLSTN3-216ENST00000545663 ADARB2Q9NS39 739 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-216ENST00000545663 GPRC5DQ9NZD1 345 aa21.08■□□□□ 0.97
CLSTN3-216ENST00000545663 BCORQ6W2J9 1755 aa21.08■□□□□ 0.96
CLSTN3-216ENST00000545663 TRPA1O75762 1119 aa21.07■□□□□ 0.96
CLSTN3-216ENST00000545663 ALDH1B1P30837 517 aa21.07■□□□□ 0.96
CLSTN3-216ENST00000545663 MKI67P46013 3256 aaKnown RBP21.07■□□□□ 0.96
CLSTN3-216ENST00000545663 HMOX1P09601 288 aa21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 HUNKP57058 714 aa21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 TPTE2Q6XPS3 522 aa21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 NPM2Q86SE8 214 aaKnown RBP21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 TEX13AQ9BXU3 409 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 RNF186Q9NXI6 227 aa21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 HPS5Q9UPZ3 1129 aa21.06■□□□□ 0.96
CLSTN3-216ENST00000545663 FAM155AB1AL88 458 aaPredicted RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms