RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 NISCHQ9Y2I1 1504 aa40.05■■■■■ 4
CLSTN3-216ENST00000545663 ABCC9O60706 1549 aa37.6■■■■□ 3.61
CLSTN3-216ENST00000545663 DNAJC5BQ9UF47 199 aa36.41■■■■□ 3.42
CLSTN3-216ENST00000545663 CCDC180Q9P1Z9 1646 aa36.26■■■■□ 3.39
CLSTN3-216ENST00000545663 RB1CC1Q8TDY2 1594 aa35.12■■■■□ 3.21
CLSTN3-216ENST00000545663 PABPN1Q86U42 306 aaKnown RBP eCLIP34.94■■■■□ 3.18
CLSTN3-216ENST00000545663 NACADO15069 1562 aa34.6■■■■□ 3.13
CLSTN3-216ENST00000545663 DCAF8L2P0C7V8 631 aa34.5■■■■□ 3.11
CLSTN3-216ENST00000545663 UNC13AQ9UPW8 1703 aa34.35■■■■□ 3.09
CLSTN3-216ENST00000545663 BICRAQ9NZM4 1560 aa34.25■■■■□ 3.07
CLSTN3-216ENST00000545663 DNAJC5Q9H3Z4 198 aa34.11■■■■□ 3.05
CLSTN3-216ENST00000545663 CECR2Q9BXF3 1484 aa33.93■■■■□ 3.02
CLSTN3-216ENST00000545663 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
CLSTN3-216ENST00000545663 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
CLSTN3-216ENST00000545663 EIF4G1Q04637 1599 aaKnown RBP33.46■■■□□ 2.95
CLSTN3-216ENST00000545663 SHROOM4Q9ULL8 1493 aa33.45■■■□□ 2.95
CLSTN3-216ENST00000545663 SCRIBQ14160 1630 aa33.15■■■□□ 2.9
CLSTN3-216ENST00000545663 ZCCHC6Q5VYS8 1495 aaKnown RBP32.92■■■□□ 2.86
CLSTN3-216ENST00000545663 DCAF1Q9Y4B6 1507 aa32.9■■■□□ 2.86
CLSTN3-216ENST00000545663 CUX2O14529 1486 aa32.7■■■□□ 2.83
CLSTN3-216ENST00000545663 ERCC6Q03468 1493 aa32.46■■■□□ 2.79
CLSTN3-216ENST00000545663 TRIM41Q8WV44 630 aa32.23■■■□□ 2.75
CLSTN3-216ENST00000545663 NCAPD3P42695 1498 aa32.03■■■□□ 2.72
CLSTN3-216ENST00000545663 NESP48681 1621 aa32.01■■■□□ 2.72
CLSTN3-216ENST00000545663 ATAD2BQ9ULI0 1458 aa31.82■■■□□ 2.68
CLSTN3-216ENST00000545663 THOC2Q8NI27 1593 aaKnown RBP31.76■■■□□ 2.67
CLSTN3-216ENST00000545663 HMGXB3Q12766 1538 aa31.61■■■□□ 2.65
CLSTN3-216ENST00000545663 SMARCA2P51531 1590 aa31.57■■■□□ 2.64
CLSTN3-216ENST00000545663 SMARCA4P51532 1647 aa31.45■■■□□ 2.62
CLSTN3-216ENST00000545663 KIF21AQ7Z4S6 1674 aa31.42■■■□□ 2.62
CLSTN3-216ENST00000545663 BAZ1BQ9UIG0 1483 aaKnown RBP31.41■■■□□ 2.62
CLSTN3-216ENST00000545663 LAMC3Q9Y6N6 1575 aa31.41■■■□□ 2.62
CLSTN3-216ENST00000545663 PDS5BQ9NTI5 1447 aa31.32■■■□□ 2.61
CLSTN3-216ENST00000545663 OSCARQ8IYS5 282 aa31.16■■■□□ 2.58
CLSTN3-216ENST00000545663 BAZ1AQ9NRL2 1556 aaPredicted RBP31.15■■■□□ 2.58
CLSTN3-216ENST00000545663 MRC2Q9UBG0 1479 aa31.14■■■□□ 2.57
CLSTN3-216ENST00000545663 PEG3Q9GZU2 1588 aa31.09■■■□□ 2.57
CLSTN3-216ENST00000545663 WDR62O43379 1518 aa31.07■■■□□ 2.56
CLSTN3-216ENST00000545663 CADPSQ9ULU8 1353 aa31.05■■■□□ 2.56
CLSTN3-216ENST00000545663 MROH2BQ7Z745 1585 aa30.92■■■□□ 2.54
CLSTN3-216ENST00000545663 RIMBP3CA6NJZ7 1639 aa30.81■■■□□ 2.52
CLSTN3-216ENST00000545663 RIMBP3BA6NNM3 1639 aa30.81■■■□□ 2.52
CLSTN3-216ENST00000545663 RIMBP3Q9UFD9 1639 aa30.81■■■□□ 2.52
CLSTN3-216ENST00000545663 CEP164Q9UPV0 1460 aa30.77■■■□□ 2.52
CLSTN3-216ENST00000545663 FANCD2Q9BXW9 1451 aa30.69■■■□□ 2.5
CLSTN3-216ENST00000545663 ARHGEF11O15085 1522 aa30.61■■■□□ 2.49
CLSTN3-216ENST00000545663 TRHP20396 242 aaPredicted RBP30.58■■■□□ 2.49
CLSTN3-216ENST00000545663 CYB5RLQ6IPT4 315 aa30.58■■■□□ 2.49
CLSTN3-216ENST00000545663 URB2Q14146 1524 aaKnown RBP30.54■■■□□ 2.48
CLSTN3-216ENST00000545663 WIZO95785 1651 aa30.47■■■□□ 2.47
CLSTN3-216ENST00000545663 AEBP2Q6ZN18 517 aaPredicted RBP30.45■■■□□ 2.47
CLSTN3-216ENST00000545663 CFTRP13569 1480 aa30.44■■■□□ 2.46
CLSTN3-216ENST00000545663 ZNF608Q9ULD9 1512 aaPredicted RBP30.39■■■□□ 2.46
CLSTN3-216ENST00000545663 ARAP1Q96P48 1450 aa30.26■■■□□ 2.44
CLSTN3-216ENST00000545663 IFT140Q96RY7 1462 aa30.2■■■□□ 2.43
CLSTN3-216ENST00000545663 FBLN2P98095 1184 aa30.05■■■□□ 2.4
CLSTN3-216ENST00000545663 EIF4G3O43432 1585 aaKnown RBP30.04■■■□□ 2.4
CLSTN3-216ENST00000545663 CHD1O14646 1710 aa30.02■■■□□ 2.4
CLSTN3-216ENST00000545663 AQRO60306 1485 aaKnown RBP eCLIP29.99■■■□□ 2.396e-9■■■■■ 31.5
CLSTN3-216ENST00000545663 RSF1Q96T23 1441 aaPredicted RBP29.97■■■□□ 2.39
CLSTN3-216ENST00000545663 TOPBP1Q92547 1522 aa29.97■■■□□ 2.39
CLSTN3-216ENST00000545663 TOP2AP11388 1531 aaKnown RBP29.92■■■□□ 2.38
CLSTN3-216ENST00000545663 PRDM2Q13029 1718 aa29.85■■■□□ 2.37
CLSTN3-216ENST00000545663 TARBP1Q13395 1621 aaKnown RBP29.78■■■□□ 2.36
CLSTN3-216ENST00000545663 ABCC8Q09428 1581 aa29.73■■■□□ 2.35
CLSTN3-216ENST00000545663 CCDC88BA6NC98 1476 aa29.71■■■□□ 2.35
CLSTN3-216ENST00000545663 DNMBPQ6XZF7 1577 aa29.71■■■□□ 2.35
CLSTN3-216ENST00000545663 CLASP1Q7Z460 1538 aa29.66■■■□□ 2.34
CLSTN3-216ENST00000545663 TDRD9Q8NDG6 1382 aaKnown RBP29.64■■■□□ 2.34
CLSTN3-216ENST00000545663 POLA1P09884 1462 aaPredicted RBP29.61■■■□□ 2.33
CLSTN3-216ENST00000545663 RAD54L2Q9Y4B4 1467 aa29.61■■■□□ 2.33
CLSTN3-216ENST00000545663 CHMP7Q8WUX9 453 aaPredicted RBP29.58■■■□□ 2.33
CLSTN3-216ENST00000545663 SNAPC4Q5SXM2 1469 aa29.57■■■□□ 2.32
CLSTN3-216ENST00000545663 SOGA1O94964 1423 aa29.49■■■□□ 2.31
CLSTN3-216ENST00000545663 SYNJ1O43426 1573 aa29.48■■■□□ 2.31
CLSTN3-216ENST00000545663 GAPVD1Q14C86 1478 aa29.48■■■□□ 2.31
CLSTN3-216ENST00000545663 ILDR1Q86SU0 546 aaPredicted RBP29.37■■■□□ 2.29
CLSTN3-216ENST00000545663 MAGI1Q96QZ7 1491 aaPredicted RBP29.36■■■□□ 2.29
CLSTN3-216ENST00000545663 SYNJ2O15056 1496 aa29.32■■■□□ 2.28
CLSTN3-216ENST00000545663 GRIN2BQ13224 1484 aa29.29■■■□□ 2.28
CLSTN3-216ENST00000545663 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
CLSTN3-216ENST00000545663 ERCC6L2Q5T890 1561 aa29.25■■■□□ 2.27
CLSTN3-216ENST00000545663 WDR97A6NE52 1622 aa29.22■■■□□ 2.27
CLSTN3-216ENST00000545663 KDM4FA0A1W2PPD8 638 aa29.1■■■□□ 2.25
CLSTN3-216ENST00000545663 CUX1P39880 1505 aa29.09■■■□□ 2.25
CLSTN3-216ENST00000545663 KIF13AQ9H1H9 1805 aa29.07■■■□□ 2.24
CLSTN3-216ENST00000545663 PBRM1Q86U86 1689 aa29.03■■■□□ 2.24
CLSTN3-216ENST00000545663 CEP170Q5SW79 1584 aa29■■■□□ 2.23
CLSTN3-216ENST00000545663 FAM69CQ0P6D2 419 aa28.94■■■□□ 2.22
CLSTN3-216ENST00000545663 GRIN2AQ12879 1464 aa28.92■■■□□ 2.22
CLSTN3-216ENST00000545663 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
CLSTN3-216ENST00000545663 NUP160Q12769 1436 aa28.86■■■□□ 2.21
CLSTN3-216ENST00000545663 ABCA10Q8WWZ4 1543 aa28.83■■■□□ 2.21
CLSTN3-216ENST00000545663 SHROOM2Q13796 1616 aa28.82■■■□□ 2.2
CLSTN3-216ENST00000545663 ABCC10Q5T3U5 1492 aa28.81■■■□□ 2.2
CLSTN3-216ENST00000545663 PRG4Q92954 1404 aaPredicted RBP28.74■■■□□ 2.19
CLSTN3-216ENST00000545663 ADAMTS12P58397 1594 aa28.73■■■□□ 2.19
CLSTN3-216ENST00000545663 KDM6BO15054 1643 aa28.72■■■□□ 2.19
CLSTN3-216ENST00000545663 NPM1P06748 294 aaKnown RBP eCLIP28.68■■■□□ 2.18
CLSTN3-216ENST00000545663 DIP2BQ9P265 1576 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms