RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 CEP131Q9UPN4 1083 aa20.52■□□□□ 0.88
PHRF1-205ENST00000533464 CFAP100Q494V2 611 aa20.52■□□□□ 0.88
PHRF1-205ENST00000533464 CKAP2LQ8IYA6 745 aa20.52■□□□□ 0.88
PHRF1-205ENST00000533464 EYA1Q99502 592 aa20.52■□□□□ 0.88
PHRF1-205ENST00000533464 SLC12A7Q9Y666 1083 aa20.52■□□□□ 0.88
PHRF1-205ENST00000533464 RANBP6O60518 1105 aaKnown RBP20.51■□□□□ 0.87
PHRF1-205ENST00000533464 ZFYVE27Q5T4F4 411 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 NEK1Q96PY6 1258 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 TEX14Q8IWB6 1497 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 GRM8O00222 908 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 IFIT3O14879 490 aaKnown RBP20.51■□□□□ 0.87
PHRF1-205ENST00000533464 KSR2Q6VAB6 950 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 DDX46Q7L014 1031 aaKnown RBP20.51■□□□□ 0.87
PHRF1-205ENST00000533464 MKNK2Q9HBH9 465 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 HAND2P61296 217 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 TANGO6Q9C0B7 1094 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 DCTPP1Q9H773 170 aa20.51■□□□□ 0.87
PHRF1-205ENST00000533464 ESYT1Q9BSJ8 1104 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 ALDH1L1O75891 902 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 ANKIB1Q9P2G1 1089 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 ANO10Q9NW15 660 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 SMC5Q8IY18 1101 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 POLR3DP05423 398 aaPredicted RBP20.5■□□□□ 0.87
PHRF1-205ENST00000533464 IQCA1Q86XH1 822 aa20.5■□□□□ 0.87
PHRF1-205ENST00000533464 DZIP1Q86YF9 867 aaKnown RBP20.5■□□□□ 0.87
PHRF1-205ENST00000533464 BMP2KQ9NSY1 1161 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-205ENST00000533464 YTHDC2Q9H6S0 1430 aaKnown RBP20.49■□□□□ 0.87
PHRF1-205ENST00000533464 CEP85Q6P2H3 762 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 CTCFLQ8NI51 663 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-205ENST00000533464 ERCC4Q92889 916 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-205ENST00000533464 DEF6Q9H4E7 631 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 PPFIA3O75145 1194 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 ABCC1P33527 1531 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 UQCRHLA0A096LP55 91 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 UQCRHP07919 91 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 ZNF287Q9HBT7 754 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 HMG20BQ9P0W2 317 aa20.49■□□□□ 0.87
PHRF1-205ENST00000533464 USP25Q9UHP3 1055 aa20.48■□□□□ 0.87
PHRF1-205ENST00000533464 ADGRL2O95490 1459 aa20.48■□□□□ 0.87
PHRF1-205ENST00000533464 ZCRB1Q8TBF4 217 aaKnown RBP20.48■□□□□ 0.87
PHRF1-205ENST00000533464 RNF41Q9H4P4 317 aaPredicted RBP20.48■□□□□ 0.87
PHRF1-205ENST00000533464 GOLGA8AA7E2F4 631 aa20.48■□□□□ 0.87
PHRF1-205ENST00000533464 USP16Q9Y5T5 823 aa20.48■□□□□ 0.87
PHRF1-205ENST00000533464 MAP3K19Q56UN5 1328 aa20.48■□□□□ 0.87
PHRF1-205ENST00000533464 CDR1P51861 262 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 KLHL40Q2TBA0 621 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 EIF4G3O43432 1585 aaKnown RBP20.47■□□□□ 0.87
PHRF1-205ENST00000533464 SETQ01105 290 aaPredicted RBP20.47■□□□□ 0.87
PHRF1-205ENST00000533464 LMBR1LQ6UX01 489 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 TCEANC2Q96MN5 208 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 ABCC2Q92887 1545 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 ZFYVE9O95405 1425 aa20.47■□□□□ 0.87
PHRF1-205ENST00000533464 NPHP3Q7Z494 1330 aa20.46■□□□□ 0.87
PHRF1-205ENST00000533464 TTF1Q15361 905 aaPredicted RBP20.46■□□□□ 0.87
PHRF1-205ENST00000533464 NGLY1Q96IV0 654 aa20.46■□□□□ 0.87
PHRF1-205ENST00000533464 PA2G4Q9UQ80 394 aaKnown RBP20.46■□□□□ 0.87
PHRF1-205ENST00000533464 NPC1L1Q9UHC9 1359 aa20.46■□□□□ 0.87
PHRF1-205ENST00000533464 NECAB1Q8N987 351 aa20.46■□□□□ 0.87
PHRF1-205ENST00000533464 RBM27Q9P2N5 1060 aaKnown RBP20.46■□□□□ 0.87
PHRF1-205ENST00000533464 LINS1Q8NG48 757 aa20.46■□□□□ 0.87
PHRF1-205ENST00000533464 FSIP1Q8NA03 581 aa20.45■□□□□ 0.86
PHRF1-205ENST00000533464 DDX19AQ9NUU7 478 aaKnown RBP20.45■□□□□ 0.86
PHRF1-205ENST00000533464 KCNA6P17658 529 aa20.45■□□□□ 0.86
PHRF1-205ENST00000533464 SF3B2Q13435 895 aaKnown RBP20.45■□□□□ 0.86
PHRF1-205ENST00000533464 BRF1Q92994 677 aa20.45■□□□□ 0.86
PHRF1-205ENST00000533464 SFPQP23246 707 aaKnown RBP eCLIP20.45■□□□□ 0.868e-6■■■■□ 25.1
PHRF1-205ENST00000533464 CABLES1Q8TDN4 633 aa20.45■□□□□ 0.86
PHRF1-205ENST00000533464 ORC3Q9UBD5 711 aaPredicted RBP20.45■□□□□ 0.86
PHRF1-205ENST00000533464 ZMYM3Q14202 1370 aa20.45■□□□□ 0.86
PHRF1-205ENST00000533464 ANAPC15P60006 121 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 NOM1Q5C9Z4 860 aaKnown RBP20.44■□□□□ 0.86
PHRF1-205ENST00000533464 KLHL10Q6JEL2 608 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 RBM8AQ9Y5S9 174 aaKnown RBP20.44■□□□□ 0.86
PHRF1-205ENST00000533464 SSRP1Q08945 709 aaKnown RBP20.44■□□□□ 0.86
PHRF1-205ENST00000533464 RAB11FIP4Q86YS3 637 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 NFATC2IPQ8NCF5 419 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 CDC5LQ99459 802 aaKnown RBP20.44■□□□□ 0.86
PHRF1-205ENST00000533464 LUC7LQ9NQ29 371 aaKnown RBP20.44■□□□□ 0.86
PHRF1-205ENST00000533464 CTAGE5O15320 804 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 SEC24BO95487 1268 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 GCP02774 474 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 MICU3Q86XE3 530 aa20.44■□□□□ 0.86
PHRF1-205ENST00000533464 SYCP1Q15431 976 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 MPHOSPH10O00566 681 aaKnown RBP20.43■□□□□ 0.86
PHRF1-205ENST00000533464 CCDC144CPQ8IYA2 1237 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 SNX21Q969T3 373 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 DMRT2Q9Y5R5 561 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 IARSP41252 1262 aaKnown RBP20.43■□□□□ 0.86
PHRF1-205ENST00000533464 TMEM67Q5HYA8 995 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 ZNF444Q8N0Y2 327 aaPredicted RBP20.43■□□□□ 0.86
PHRF1-205ENST00000533464 SEC63Q9UGP8 760 aaKnown RBP20.43■□□□□ 0.86
PHRF1-205ENST00000533464 CWF19L2Q2TBE0 894 aaKnown RBP20.43■□□□□ 0.86
PHRF1-205ENST00000533464 PLEKHM2Q8IWE5 1019 aa20.43■□□□□ 0.86
PHRF1-205ENST00000533464 ZBTB7BO15156 539 aaPredicted RBP20.42■□□□□ 0.86
PHRF1-205ENST00000533464 UBE2HP62256 183 aa20.42■□□□□ 0.86
PHRF1-205ENST00000533464 NCOA7Q8NI08 942 aa20.42■□□□□ 0.86
PHRF1-205ENST00000533464 MSH6P52701 1360 aa20.42■□□□□ 0.86
PHRF1-205ENST00000533464 EIF5P55010 431 aaKnown RBP20.42■□□□□ 0.86
PHRF1-205ENST00000533464 TMEM132AQ24JP5 1023 aa20.42■□□□□ 0.86
PHRF1-205ENST00000533464 LRRC2Q9BYS8 371 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms