RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CASZ1Q86V15 1759 aa19.13■□□□□ 0.65
NUP54-213ENST00000513352 MAP3K15Q6ZN16 1313 aa19.12■□□□□ 0.65
NUP54-213ENST00000513352 DDX58O95786 925 aaKnown RBP19.12■□□□□ 0.65
NUP54-213ENST00000513352 FLIIQ13045 1269 aa19.12■□□□□ 0.65
NUP54-213ENST00000513352 FKBP5Q13451 457 aaPredicted RBP19.12■□□□□ 0.65
NUP54-213ENST00000513352 G2E3Q7L622 706 aa19.12■□□□□ 0.65
NUP54-213ENST00000513352 MRPL50Q8N5N7 158 aaKnown RBP19.12■□□□□ 0.65
NUP54-213ENST00000513352 CAMTA2O94983 1202 aa19.11■□□□□ 0.65
NUP54-213ENST00000513352 ZBTB7AO95365 584 aa19.11■□□□□ 0.65
NUP54-213ENST00000513352 ZNF652Q9Y2D9 606 aa19.11■□□□□ 0.65
NUP54-213ENST00000513352 RIC3Q7Z5B4 369 aa19.1■□□□□ 0.65
NUP54-213ENST00000513352 RCAN3Q9UKA8 241 aa19.1■□□□□ 0.65
NUP54-213ENST00000513352 NUP98P52948 1817 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 ARFGEF2Q9Y6D5 1785 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 BCAR3O75815 825 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 GYS1P13807 737 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 BICDL1Q6ZP65 573 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 ANKRD13DQ6ZTN6 518 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 PLBD2Q8NHP8 589 aa19.09■□□□□ 0.65
NUP54-213ENST00000513352 FKBP8Q14318 412 aa19.08■□□□□ 0.64
NUP54-213ENST00000513352 SLC16A10Q8TF71 515 aa19.08■□□□□ 0.64
NUP54-213ENST00000513352 FRAT1Q92837 279 aaPredicted RBP19.08■□□□□ 0.64
NUP54-213ENST00000513352 ATF5Q9Y2D1 282 aaPredicted RBP19.08■□□□□ 0.64
NUP54-213ENST00000513352 KIF16BQ96L93 1317 aa19.07■□□□□ 0.64
NUP54-213ENST00000513352 ERVV-1B6SEH8 477 aa19.07■□□□□ 0.64
NUP54-213ENST00000513352 HLFQ16534 295 aa19.07■□□□□ 0.64
NUP54-213ENST00000513352 PI4KAP2A4QPH2 592 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 NLGN1Q8N2Q7 840 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 PI4KAP1Q8N8J0 262 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 MTFR1LQ9H019 292 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 BCL2L12Q9HB09 334 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 NOB1Q9ULX3 412 aaKnown RBP19.06■□□□□ 0.64
NUP54-213ENST00000513352 MAP3K2Q9Y2U5 619 aa19.06■□□□□ 0.64
NUP54-213ENST00000513352 TBC1D9BQ66K14 1250 aa19.05■□□□□ 0.64
NUP54-213ENST00000513352 KSR2Q6VAB6 950 aa19.05■□□□□ 0.64
NUP54-213ENST00000513352 GIGYF2Q6Y7W6 1299 aaKnown RBP19.05■□□□□ 0.64
NUP54-213ENST00000513352 ANKRD36CQ5JPF3 1778 aa19.05■□□□□ 0.64
NUP54-213ENST00000513352 ADCY9O60503 1353 aa19.05■□□□□ 0.64
NUP54-213ENST00000513352 PTPRCP08575 1304 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 F6X3S4 739 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 GPTP24298 496 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 HSP90AB3PQ58FF7 597 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 CLEC4GQ6UXB4 293 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 MYD88Q99836 296 aa19.04■□□□□ 0.64
NUP54-213ENST00000513352 NIP7Q9Y221 180 aaKnown RBP eCLIP19.04■□□□□ 0.64
NUP54-213ENST00000513352 FAM177BA6PVY3 158 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 NPHP1O15259 732 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 IPO8O15397 1037 aaKnown RBP19.03■□□□□ 0.64
NUP54-213ENST00000513352 MMP10P09238 476 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 POLD1P28340 1107 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 NEXNQ0ZGT2 675 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 SLC4A10Q6U841 1118 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 DNAAF4Q8WXU2 420 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 SETDB2Q96T68 719 aa19.03■□□□□ 0.64
NUP54-213ENST00000513352 AFDNP55196 1824 aaKnown RBP19.02■□□□□ 0.64
NUP54-213ENST00000513352 ATP5J2-PTCD1G3V325 749 aa19.02■□□□□ 0.64
NUP54-213ENST00000513352 BRPF1P55201 1214 aaPredicted RBP19.02■□□□□ 0.64
NUP54-213ENST00000513352 NFIXQ14938 502 aa19.02■□□□□ 0.64
NUP54-213ENST00000513352 SPON1Q9HCB6 807 aa19.02■□□□□ 0.64
NUP54-213ENST00000513352 PARP3Q9Y6F1 533 aa19.02■□□□□ 0.64
NUP54-213ENST00000513352 ATP10DQ9P241 1426 aa19.01■□□□□ 0.63
NUP54-213ENST00000513352 RGL2O15211 777 aa19.01■□□□□ 0.63
NUP54-213ENST00000513352 TCIRG1Q13488 830 aa19.01■□□□□ 0.63
NUP54-213ENST00000513352 METTL22Q9BUU2 404 aaPredicted RBP19.01■□□□□ 0.63
NUP54-213ENST00000513352 API5Q9BZZ5 524 aaKnown RBP19.01■□□□□ 0.63
NUP54-213ENST00000513352 ZKSCAN2Q63HK3 967 aa19■□□□□ 0.63
NUP54-213ENST00000513352 CARMIL3Q8ND23 1372 aa19■□□□□ 0.63
NUP54-213ENST00000513352 TM4SF1P30408 202 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 DDR1Q08345 913 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 ATF7IPQ6VMQ6 1270 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 NBPF5PQ86XG9 351 aaPredicted RBP18.98■□□□□ 0.63
NUP54-213ENST00000513352 ZNF34Q8IZ26 560 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.98■□□□□ 0.63
NUP54-213ENST00000513352 CLUAP1Q96AJ1 413 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 UBN2Q6ZU65 1347 aa18.98■□□□□ 0.63
NUP54-213ENST00000513352 COL24A1Q17RW2 1714 aa18.97■□□□□ 0.63
NUP54-213ENST00000513352 POLRMTO00411 1230 aaKnown RBP18.97■□□□□ 0.63
NUP54-213ENST00000513352 SERPINB2P05120 415 aa18.97■□□□□ 0.63
NUP54-213ENST00000513352 GTF2E1P29083 439 aaPredicted RBP18.97■□□□□ 0.63
NUP54-213ENST00000513352 PARP10Q53GL7 1025 aa18.97■□□□□ 0.63
NUP54-213ENST00000513352 FTSJ3Q8IY81 847 aaKnown RBP18.97■□□□□ 0.63
NUP54-213ENST00000513352 ARHGAP45Q92619 1136 aa18.97■□□□□ 0.63
NUP54-213ENST00000513352 PLIN1O60240 522 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 TRIM27P14373 513 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 CWF19L2Q2TBE0 894 aaKnown RBP18.96■□□□□ 0.63
NUP54-213ENST00000513352 PPP1R42Q7Z4L9 355 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 NLRP10Q86W26 655 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 KLHL34Q8N239 644 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 ISCA1Q9BUE6 129 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 PPP1R1BQ9UD71 204 aaPredicted RBP18.96■□□□□ 0.63
NUP54-213ENST00000513352 TNNQ9UQP3 1299 aa18.96■□□□□ 0.63
NUP54-213ENST00000513352 IGKV5-2P06315 115 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 CENPBP07199 599 aaPredicted RBP18.95■□□□□ 0.62
NUP54-213ENST00000513352 SUSD4Q5VX71 490 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 CNBD1Q8NA66 436 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 LINS1Q8NG48 757 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 UTP14AQ9BVJ6 771 aaKnown RBP18.95■□□□□ 0.62
NUP54-213ENST00000513352 SRCIN1Q9C0H9 1055 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 NYXQ9GZU5 481 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 CWC25Q9NXE8 425 aaPredicted RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms