RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CALD1Q05682 793 aaKnown RBP15.9■□□□□ 0.14
PTPRF-213ENST00000481019 CCDC24Q8N4L8 307 aa15.9■□□□□ 0.14
PTPRF-213ENST00000481019 CHPF2Q9P2E5 772 aa15.9■□□□□ 0.14
PTPRF-213ENST00000481019 A0A0G2JLW4 131 aa15.89■□□□□ 0.13
PTPRF-213ENST00000481019 YBX3P16989 372 aaKnown RBP eCLIP15.89■□□□□ 0.134e-7■□□□□ 8.4
PTPRF-213ENST00000481019 IL16Q14005 1332 aa15.89■□□□□ 0.13
PTPRF-213ENST00000481019 ERBB4Q15303 1308 aa15.89■□□□□ 0.13
PTPRF-213ENST00000481019 ZNF521Q96K83 1311 aa15.89■□□□□ 0.13
PTPRF-213ENST00000481019 HDGFL1Q5TGJ6 251 aa15.88■□□□□ 0.13
PTPRF-213ENST00000481019 ZBTB3Q9H5J0 574 aa15.88■□□□□ 0.13
PTPRF-213ENST00000481019 NUP98P52948 1817 aa15.88■□□□□ 0.13
PTPRF-213ENST00000481019 MAP3K15Q6ZN16 1313 aa15.88■□□□□ 0.13
PTPRF-213ENST00000481019 ANKRD31Q8N7Z5 1873 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 HOXB7P09629 217 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 DPEP1P16444 411 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 KCNA3P22001 575 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 WDR63Q8IWG1 891 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 XAGE3Q8WTP9 111 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 DDX21Q9NR30 783 aaKnown RBP eCLIP15.87■□□□□ 0.13
PTPRF-213ENST00000481019 FANCIQ9NVI1 1328 aa15.87■□□□□ 0.13
PTPRF-213ENST00000481019 CHRNA5P30532 468 aa15.86■□□□□ 0.13
PTPRF-213ENST00000481019 AIMP1Q12904 312 aaKnown RBP15.86■□□□□ 0.13
PTPRF-213ENST00000481019 COPS6Q7L5N1 327 aa15.86■□□□□ 0.13
PTPRF-213ENST00000481019 NPM2Q86SE8 214 aaKnown RBP15.86■□□□□ 0.13
PTPRF-213ENST00000481019 PELP1Q8IZL8 1130 aaKnown RBP15.86■□□□□ 0.13
PTPRF-213ENST00000481019 TCERG1O14776 1098 aaKnown RBP15.85■□□□□ 0.13
PTPRF-213ENST00000481019 PRR5LQ6MZQ0 368 aa15.85■□□□□ 0.13
PTPRF-213ENST00000481019 CLEC4GQ6UXB4 293 aa15.85■□□□□ 0.13
PTPRF-213ENST00000481019 SETDB2Q96T68 719 aa15.85■□□□□ 0.13
PTPRF-213ENST00000481019 BRCA1P38398 1863 aaKnown RBP15.84■□□□□ 0.13
PTPRF-213ENST00000481019 FAM177BA6PVY3 158 aa15.84■□□□□ 0.13
PTPRF-213ENST00000481019 ERVV-1B6SEH8 477 aa15.84■□□□□ 0.13
PTPRF-213ENST00000481019 GPR162Q16538 588 aa15.84■□□□□ 0.13
PTPRF-213ENST00000481019 KIF6Q6ZMV9 814 aa15.84■□□□□ 0.13
PTPRF-213ENST00000481019 PHAXQ9H814 394 aaKnown RBP15.84■□□□□ 0.13
PTPRF-213ENST00000481019 NIP7Q9Y221 180 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTPRF-213ENST00000481019 UBN2Q6ZU65 1347 aa15.84■□□□□ 0.13
PTPRF-213ENST00000481019 COL11A2P13942 1736 aaPredicted RBP15.83■□□□□ 0.13
PTPRF-213ENST00000481019 GPTP24298 496 aa15.83■□□□□ 0.12
PTPRF-213ENST00000481019 TGFB2P61812 414 aa15.83■□□□□ 0.12
PTPRF-213ENST00000481019 EXOSC9Q06265 439 aaKnown RBP15.83■□□□□ 0.12
PTPRF-213ENST00000481019 GIGYF2Q6Y7W6 1299 aaKnown RBP15.82■□□□□ 0.12
PTPRF-213ENST00000481019 DBF4Q9UBU7 674 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-213ENST00000481019 ZNF652Q9Y2D9 606 aa15.82■□□□□ 0.12
PTPRF-213ENST00000481019 ATP10DQ9P241 1426 aa15.82■□□□□ 0.12
PTPRF-213ENST00000481019 RGL2O15211 777 aa15.81■□□□□ 0.12
PTPRF-213ENST00000481019 TWISTNBQ3B726 338 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-213ENST00000481019 SUSD4Q5VX71 490 aa15.81■□□□□ 0.12
PTPRF-213ENST00000481019 ZNF34Q8IZ26 560 aa15.81■□□□□ 0.12
PTPRF-213ENST00000481019 ZNF428Q96B54 188 aa15.81■□□□□ 0.12
PTPRF-213ENST00000481019 ANKRD36CQ5JPF3 1778 aa15.8■□□□□ 0.12
PTPRF-213ENST00000481019 DLEC1Q9Y238 1755 aa15.8■□□□□ 0.12
PTPRF-213ENST00000481019 TNRC6CQ9HCJ0 1690 aaKnown RBP15.8■□□□□ 0.12
PTPRF-213ENST00000481019 ABCC12Q96J65 1359 aa15.8■□□□□ 0.12
PTPRF-213ENST00000481019 NBPF5PQ86XG9 351 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-213ENST00000481019 CNBD1Q8NA66 436 aa15.8■□□□□ 0.12
PTPRF-213ENST00000481019 CDCA7LQ96GN5 454 aa15.8■□□□□ 0.12
PTPRF-213ENST00000481019 VAMP4O75379 141 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 G2E3Q7L622 706 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 NUTM1Q86Y26 1132 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 C2CD5Q86YS7 1000 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 HYPKQ9NX55 129 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 ARFGEF2Q9Y6D5 1785 aa15.79■□□□□ 0.12
PTPRF-213ENST00000481019 GOLGA2Q08379 1002 aa15.78■□□□□ 0.12
PTPRF-213ENST00000481019 ERFEQ4G0M1 354 aa15.78■□□□□ 0.12
PTPRF-213ENST00000481019 CCDC30Q5VVM6 783 aa15.78■□□□□ 0.12
PTPRF-213ENST00000481019 BRIP1Q9BX63 1249 aa15.78■□□□□ 0.12
PTPRF-213ENST00000481019 BCS1LQ9Y276 419 aa15.78■□□□□ 0.12
PTPRF-213ENST00000481019 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.12
PTPRF-213ENST00000481019 NTSR2O95665 410 aa15.77■□□□□ 0.12
PTPRF-213ENST00000481019 C3orf67Q6ZVT6 689 aa15.77■□□□□ 0.12
PTPRF-213ENST00000481019 SYNE4Q8N205 404 aa15.77■□□□□ 0.12
PTPRF-213ENST00000481019 PLBD2Q8NHP8 589 aa15.77■□□□□ 0.12
PTPRF-213ENST00000481019 SLFN5Q08AF3 891 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 TCIRG1Q13488 830 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 ANKRD13DQ6ZTN6 518 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 NLRP10Q86W26 655 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 MYH16Q9H6N6 1097 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 PIM2Q9P1W9 311 aa15.76■□□□□ 0.11
PTPRF-213ENST00000481019 ATP5J2-PTCD1G3V325 749 aa15.75■□□□□ 0.11
PTPRF-213ENST00000481019 CENPBP07199 599 aaPredicted RBP15.75■□□□□ 0.11
PTPRF-213ENST00000481019 ST5P78524 1137 aa15.75■□□□□ 0.11
PTPRF-213ENST00000481019 TPTE2Q6XPS3 522 aa15.75■□□□□ 0.11
PTPRF-213ENST00000481019 ARFGEF1Q9Y6D6 1849 aa15.75■□□□□ 0.11
PTPRF-213ENST00000481019 H0YIN7 160 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 NPHP1O15259 732 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 SLC4A2P04920 1241 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 PDE6BP35913 854 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 DALRD3Q5D0E6 543 aaKnown RBP15.74■□□□□ 0.11
PTPRF-213ENST00000481019 TRMT2AQ8IZ69 625 aaKnown RBP15.74■□□□□ 0.11
PTPRF-213ENST00000481019 ISCA1Q9BUE6 129 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 ADCY9O60503 1353 aa15.74■□□□□ 0.11
PTPRF-213ENST00000481019 IBTKQ9P2D0 1353 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-213ENST00000481019 KLRG2A4D1S0 409 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-213ENST00000481019 GRIN3BO60391 1043 aa15.73■□□□□ 0.11
PTPRF-213ENST00000481019 SRGNP10124 158 aa15.73■□□□□ 0.11
PTPRF-213ENST00000481019 SLC51AQ86UW1 340 aa15.73■□□□□ 0.11
PTPRF-213ENST00000481019 ZNF622Q969S3 477 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPRF-213ENST00000481019 CACNA1SQ13698 1873 aa15.73■□□□□ 0.11
PTPRF-213ENST00000481019 SLX4Q8IY92 1834 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms