RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF219Q9P2Y4 722 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-207ENST00000475549 GLTPD2A6NH11 291 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 DDX10Q13206 875 aaKnown RBP9.31□□□□□ -0.92
HDAC3-207ENST00000475549 STYK1Q6J9G0 422 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 PRPF40BQ6NWY9 871 aaKnown RBP9.31□□□□□ -0.92
HDAC3-207ENST00000475549 OLFM4Q6UX06 510 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 NPM2Q86SE8 214 aaKnown RBP9.31□□□□□ -0.92
HDAC3-207ENST00000475549 NBPF5PQ86XG9 351 aaPredicted RBP9.31□□□□□ -0.92
HDAC3-207ENST00000475549 NGEFQ8N5V2 710 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 PDZRN3Q9UPQ7 1066 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 KDM2BQ8NHM5 1336 aa9.31□□□□□ -0.92
HDAC3-207ENST00000475549 FAM177BA6PVY3 158 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 RGL2O15211 777 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 APLP1P51693 650 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 PDIA6Q15084 440 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 RALBP1Q15311 655 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 TTLL7Q6ZT98 887 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 LRP10Q7Z4F1 713 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 PNISRQ8TF01 805 aaKnown RBP9.3□□□□□ -0.92
HDAC3-207ENST00000475549 CNKSR1Q969H4 720 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 MASTLQ96GX5 879 aa9.3□□□□□ -0.92
HDAC3-207ENST00000475549 NIP7Q9Y221 180 aaKnown RBP eCLIP9.3□□□□□ -0.92
HDAC3-207ENST00000475549 AFDNP55196 1824 aaKnown RBP9.29□□□□□ -0.92
HDAC3-207ENST00000475549 RIPK4P57078 832 aa9.29□□□□□ -0.92
HDAC3-207ENST00000475549 ST5P78524 1137 aa9.29□□□□□ -0.92
HDAC3-207ENST00000475549 TPTE2Q6XPS3 522 aa9.29□□□□□ -0.92
HDAC3-207ENST00000475549 RRP7AQ9Y3A4 280 aaKnown RBP9.29□□□□□ -0.92
HDAC3-207ENST00000475549 ZC3H4Q9UPT8 1303 aaKnown RBP9.29□□□□□ -0.92
HDAC3-207ENST00000475549 ERVV-1B6SEH8 477 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 NPHP1O15259 732 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 MYL6BP14649 208 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 VEGFAP15692 232 aaPredicted RBP9.28□□□□□ -0.92
HDAC3-207ENST00000475549 TMPOP42166 694 aaKnown RBP9.28□□□□□ -0.92
HDAC3-207ENST00000475549 FSTL1Q12841 308 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 PROSER3Q2NL68 480 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 ERFEQ4G0M1 354 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 SLC51AQ86UW1 340 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 NUTM1Q86Y26 1132 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 TAOK3Q9H2K8 898 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 ZNF652Q9Y2D9 606 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 ARFGEF1Q9Y6D6 1849 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 UBN2Q6ZU65 1347 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 LTBP3Q9NS15 1303 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 PCNTO95613 3336 aa9.28□□□□□ -0.92
HDAC3-207ENST00000475549 SCN7AQ01118 1682 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 VIRMAQ69YN4 1812 aaKnown RBP9.27□□□□□ -0.93
HDAC3-207ENST00000475549 DDNO94850 711 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-207ENST00000475549 NEFMP07197 916 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 NPR1P16066 1061 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 CRY2Q49AN0 593 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 SUSD4Q5VX71 490 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 CCDC146Q8IYE0 955 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 C16orf71Q8IYS4 520 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-207ENST00000475549 ZNF34Q8IZ26 560 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 TRIM35Q9UPQ4 493 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 MAP3K15Q6ZN16 1313 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 MAPK8IP3Q9UPT6 1336 aa9.27□□□□□ -0.93
HDAC3-207ENST00000475549 ANKRD31Q8N7Z5 1873 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 ANXA1P04083 346 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 GPTP24298 496 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 KRT24Q2M2I5 525 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 C3orf67Q6ZVT6 689 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 SMC1BQ8NDV3 1235 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 PNNQ9H307 717 aaKnown RBP9.26□□□□□ -0.93
HDAC3-207ENST00000475549 ZBTB3Q9H5J0 574 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 ZNF277Q9NRM2 450 aaPredicted RBP9.26□□□□□ -0.93
HDAC3-207ENST00000475549 TSPYL4Q9UJ04 414 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 ADAMTS8Q9UP79 889 aa9.26□□□□□ -0.93
HDAC3-207ENST00000475549 ABCC12Q96J65 1359 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 CHL1O00533 1208 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 POTEIP0CG38 1075 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 POTEJP0CG39 1038 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 EIF2S2P20042 333 aaKnown RBP9.25□□□□□ -0.93
HDAC3-207ENST00000475549 NEUROD2Q15784 382 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 DPY19L2Q6NUT2 758 aa9.25□□□□□ -0.93
HDAC3-207ENST00000475549 SNED1Q8TER0 1413 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 NTSR2O95665 410 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 ALDH1B1P30837 517 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 HOXA10P31260 410 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-207ENST00000475549 FKBP4Q02790 459 aaKnown RBP eCLIP9.24□□□□□ -0.93
HDAC3-207ENST00000475549 CCDC93Q567U6 631 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 SOGA3Q5TF21 947 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 GIGYF2Q6Y7W6 1299 aaKnown RBP9.24□□□□□ -0.93
HDAC3-207ENST00000475549 KIF6Q6ZMV9 814 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 NECTIN2Q92692 538 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 KLRG1Q96E93 195 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 BABAM1Q9NWV8 329 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 COL11A2P13942 1736 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-207ENST00000475549 MYBBP1AQ9BQG0 1328 aaKnown RBP9.24□□□□□ -0.93
HDAC3-207ENST00000475549 DLEC1Q9Y238 1755 aa9.24□□□□□ -0.93
HDAC3-207ENST00000475549 GTF2E1P29083 439 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-207ENST00000475549 IFFO2Q5TF58 517 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 COPS6Q7L5N1 327 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 RTKN2Q8IZC4 609 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 SYNE4Q8N205 404 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 RUNDC1Q96C34 613 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 NYXQ9GZU5 481 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 SLX4Q8IY92 1834 aa9.23□□□□□ -0.93
HDAC3-207ENST00000475549 ERBB4Q15303 1308 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms