RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 PRKAR2BP31323 418 aa23.19■■□□□ 1.3
HMGN1-209ENST00000463631 PRPF40BQ6NWY9 871 aaKnown RBP23.19■■□□□ 1.3
HMGN1-209ENST00000463631 DZIP3Q86Y13 1208 aaKnown RBP23.19■■□□□ 1.3
HMGN1-209ENST00000463631 CCDC24Q8N4L8 307 aa23.19■■□□□ 1.3
HMGN1-209ENST00000463631 RGL2O15211 777 aa23.18■■□□□ 1.3
HMGN1-209ENST00000463631 KCNQ3O43525 872 aa23.18■■□□□ 1.3
HMGN1-209ENST00000463631 CLEC4GQ6UXB4 293 aa23.18■■□□□ 1.3
HMGN1-209ENST00000463631 CFAP53Q96M91 514 aa23.18■■□□□ 1.3
HMGN1-209ENST00000463631 MASTLQ96GX5 879 aa23.17■■□□□ 1.3
HMGN1-209ENST00000463631 ZNF219Q9P2Y4 722 aaPredicted RBP23.17■■□□□ 1.3
HMGN1-209ENST00000463631 NPHP1O15259 732 aa23.16■■□□□ 1.3
HMGN1-209ENST00000463631 SCN4AP35499 1836 aa23.15■■□□□ 1.3
HMGN1-209ENST00000463631 ZNF652Q9Y2D9 606 aa23.15■■□□□ 1.3
HMGN1-209ENST00000463631 USP16Q9Y5T5 823 aa23.15■■□□□ 1.3
HMGN1-209ENST00000463631 LAMB4A4D0S4 1761 aa23.14■■□□□ 1.3
HMGN1-209ENST00000463631 SNRPA1P09661 255 aaKnown RBP23.14■■□□□ 1.29
HMGN1-209ENST00000463631 CHADLQ6NUI6 762 aa23.14■■□□□ 1.29
HMGN1-209ENST00000463631 KLRG2A4D1S0 409 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-209ENST00000463631 NBPF5PQ86XG9 351 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-209ENST00000463631 C7orf43Q8WVR3 580 aa23.13■■□□□ 1.29
HMGN1-209ENST00000463631 NUDCQ9Y266 331 aa23.13■■□□□ 1.29
HMGN1-209ENST00000463631 HSPA1AP0DMV8 641 aaKnown RBP23.12■■□□□ 1.29
HMGN1-209ENST00000463631 HSPA1BP0DMV9 641 aaKnown RBP23.12■■□□□ 1.29
HMGN1-209ENST00000463631 TNS4Q8IZW8 715 aa23.12■■□□□ 1.29
HMGN1-209ENST00000463631 L3MBTL3Q96JM7 780 aaPredicted RBP23.12■■□□□ 1.29
HMGN1-209ENST00000463631 PRAMEF22A3QJZ6 481 aa23.11■■□□□ 1.29
HMGN1-209ENST00000463631 NPR1P16066 1061 aa23.11■■□□□ 1.29
HMGN1-209ENST00000463631 CNGB1Q14028 1251 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-209ENST00000463631 CCDC93Q567U6 631 aa23.11■■□□□ 1.29
HMGN1-209ENST00000463631 CREBZFQ9NS37 354 aa23.11■■□□□ 1.29
HMGN1-209ENST00000463631 IQCA1LA6NCM1 817 aa23.1■■□□□ 1.29
HMGN1-209ENST00000463631 DDNO94850 711 aaPredicted RBP23.1■■□□□ 1.29
HMGN1-209ENST00000463631 PIP4K2AP48426 406 aaPredicted RBP23.1■■□□□ 1.29
HMGN1-209ENST00000463631 RTF1Q92541 710 aaKnown RBP23.1■■□□□ 1.29
HMGN1-209ENST00000463631 NBPF26B4DH59 902 aa23.09■■□□□ 1.29
HMGN1-209ENST00000463631 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
HMGN1-209ENST00000463631 NBPF10Q6P3W6 841 aaKnown RBP23.09■■□□□ 1.29
HMGN1-209ENST00000463631 MCM10Q7L590 875 aa23.09■■□□□ 1.29
HMGN1-209ENST00000463631 NBPF15Q8N660 670 aa23.09■■□□□ 1.29
HMGN1-209ENST00000463631 POTEIP0CG38 1075 aa23.08■■□□□ 1.29
HMGN1-209ENST00000463631 POTEJP0CG39 1038 aa23.08■■□□□ 1.29
HMGN1-209ENST00000463631 U2AF1L5P0DN76 240 aaPredicted RBP23.08■■□□□ 1.29
HMGN1-209ENST00000463631 U2AF1Q01081 240 aaKnown RBP eCLIP23.08■■□□□ 1.291e-6■□□□□ 10.2
HMGN1-209ENST00000463631 ADAMTSL1Q8N6G6 1762 aa23.07■■□□□ 1.28
HMGN1-209ENST00000463631 PPP2R1AP30153 589 aa23.07■■□□□ 1.28
HMGN1-209ENST00000463631 TPTE2Q6XPS3 522 aa23.07■■□□□ 1.28
HMGN1-209ENST00000463631 PASKQ96RG2 1323 aa23.07■■□□□ 1.28
HMGN1-209ENST00000463631 KDM3BQ7LBC6 1761 aa23.06■■□□□ 1.28
HMGN1-209ENST00000463631 FKBP4Q02790 459 aaKnown RBP eCLIP23.06■■□□□ 1.28
HMGN1-209ENST00000463631 LDHDQ86WU2 507 aa23.06■■□□□ 1.28
HMGN1-209ENST00000463631 NIP7Q9Y221 180 aaKnown RBP eCLIP23.06■■□□□ 1.28
HMGN1-209ENST00000463631 SNED1Q8TER0 1413 aa23.05■■□□□ 1.28
HMGN1-209ENST00000463631 TAF1DQ9H5J8 278 aaPredicted RBP23.04■■□□□ 1.28
HMGN1-209ENST00000463631 CNTNAP1P78357 1384 aa23.03■■□□□ 1.28
HMGN1-209ENST00000463631 RIC1Q4ADV7 1423 aa23.03■■□□□ 1.28
HMGN1-209ENST00000463631 RTKN2Q8IZC4 609 aa23.03■■□□□ 1.28
HMGN1-209ENST00000463631 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
HMGN1-209ENST00000463631 DCTN1Q14203 1278 aa23.02■■□□□ 1.28
HMGN1-209ENST00000463631 TAF7Q15545 349 aaPredicted RBP23.02■■□□□ 1.28
HMGN1-209ENST00000463631 ZNF541Q9H0D2 1346 aa23.02■■□□□ 1.28
HMGN1-209ENST00000463631 NUP98P52948 1817 aa23.01■■□□□ 1.27
HMGN1-209ENST00000463631 CRY2Q49AN0 593 aa23.01■■□□□ 1.27
HMGN1-209ENST00000463631 ZNF277Q9NRM2 450 aaPredicted RBP23.01■■□□□ 1.27
HMGN1-209ENST00000463631 IBTKQ9P2D0 1353 aaPredicted RBP23.01■■□□□ 1.27
HMGN1-209ENST00000463631 CAPN15O75808 1086 aa23■■□□□ 1.27
HMGN1-209ENST00000463631 ALDH1B1P30837 517 aa23■■□□□ 1.27
HMGN1-209ENST00000463631 MKRN1Q9UHC7 482 aaKnown RBP23■■□□□ 1.27
HMGN1-209ENST00000463631 HLFQ16534 295 aa22.99■■□□□ 1.27
HMGN1-209ENST00000463631 OLFM4Q6UX06 510 aa22.99■■□□□ 1.27
HMGN1-209ENST00000463631 HACL1Q9UJ83 578 aa22.99■■□□□ 1.27
HMGN1-209ENST00000463631 ABCC12Q96J65 1359 aa22.99■■□□□ 1.27
HMGN1-209ENST00000463631 ERVV-1B6SEH8 477 aa22.98■■□□□ 1.27
HMGN1-209ENST00000463631 FZD9O00144 591 aa22.98■■□□□ 1.27
HMGN1-209ENST00000463631 ITGBL1O95965 494 aaPredicted RBP22.98■■□□□ 1.27
HMGN1-209ENST00000463631 IARSP41252 1262 aaKnown RBP22.98■■□□□ 1.27
HMGN1-209ENST00000463631 PSMD1Q99460 953 aa22.98■■□□□ 1.27
HMGN1-209ENST00000463631 NYXQ9GZU5 481 aa22.97■■□□□ 1.27
HMGN1-209ENST00000463631 CC2D2BQ6DHV5 1058 aa22.96■■□□□ 1.27
HMGN1-209ENST00000463631 PNMA8AQ86V59 439 aaPredicted RBP22.96■■□□□ 1.27
HMGN1-209ENST00000463631 GPC2Q8N158 579 aa22.96■■□□□ 1.27
HMGN1-209ENST00000463631 PNISRQ8TF01 805 aaKnown RBP22.96■■□□□ 1.27
HMGN1-209ENST00000463631 TMEM88BA6NKF7 163 aa22.95■■□□□ 1.26
HMGN1-209ENST00000463631 FAM177BA6PVY3 158 aa22.95■■□□□ 1.26
HMGN1-209ENST00000463631 GTF2E1P29083 439 aaPredicted RBP22.95■■□□□ 1.26
HMGN1-209ENST00000463631 EPHX2P34913 555 aa22.95■■□□□ 1.26
HMGN1-209ENST00000463631 MAP3K15Q6ZN16 1313 aa22.95■■□□□ 1.26
HMGN1-209ENST00000463631 COL4A5P29400 1685 aa22.94■■□□□ 1.26
HMGN1-209ENST00000463631 HOXA10P31260 410 aaPredicted RBP22.94■■□□□ 1.26
HMGN1-209ENST00000463631 SYNE4Q8N205 404 aa22.94■■□□□ 1.26
HMGN1-209ENST00000463631 MIS18AQ9NYP9 233 aa22.94■■□□□ 1.26
HMGN1-209ENST00000463631 RNF123Q5XPI4 1314 aa22.93■■□□□ 1.26
HMGN1-209ENST00000463631 EAPPQ56P03 285 aaPredicted RBP22.93■■□□□ 1.26
HMGN1-209ENST00000463631 EIF4A1P60842 406 aaKnown RBP22.92■■□□□ 1.26
HMGN1-209ENST00000463631 GRIPAP1Q4V328 841 aa22.92■■□□□ 1.26
HMGN1-209ENST00000463631 ERBB4Q15303 1308 aa22.91■■□□□ 1.26
HMGN1-209ENST00000463631 UBN2Q6ZU65 1347 aa22.91■■□□□ 1.26
HMGN1-209ENST00000463631 FOXN1O15353 648 aa22.91■■□□□ 1.26
HMGN1-209ENST00000463631 NEFMP07197 916 aa22.91■■□□□ 1.26
HMGN1-209ENST00000463631 KIF6Q6ZMV9 814 aa22.91■■□□□ 1.26
HMGN1-209ENST00000463631 NUTM1Q86Y26 1132 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms