RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 PLBD2Q8NHP8 589 aa29.1■■■□□ 2.25
CPSF4-204ENST00000436336 AFDNP55196 1824 aaKnown RBP29.09■■■□□ 2.25
CPSF4-204ENST00000436336 APBA3O96018 575 aa29.09■■■□□ 2.25
CPSF4-204ENST00000436336 RC3H1Q5TC82 1133 aaKnown RBP29.09■■■□□ 2.25
CPSF4-204ENST00000436336 TTLL7Q6ZT98 887 aa29.08■■■□□ 2.25
CPSF4-204ENST00000436336 ZNF330Q9Y3S2 320 aaPredicted RBP29.08■■■□□ 2.25
CPSF4-204ENST00000436336 EIF5P55010 431 aaKnown RBP29.08■■■□□ 2.25
CPSF4-204ENST00000436336 NPM2Q86SE8 214 aaKnown RBP29.08■■■□□ 2.25
CPSF4-204ENST00000436336 ZBTB7BO15156 539 aaPredicted RBP29.07■■■□□ 2.24
CPSF4-204ENST00000436336 HMGB2P26583 209 aaKnown RBP29.07■■■□□ 2.24
CPSF4-204ENST00000436336 BEND3Q5T5X7 828 aa29.06■■■□□ 2.24
CPSF4-204ENST00000436336 SRCIN1Q9C0H9 1055 aa29.06■■■□□ 2.24
CPSF4-204ENST00000436336 NUP98P52948 1817 aa29.06■■■□□ 2.24
CPSF4-204ENST00000436336 KIF6Q6ZMV9 814 aa29.06■■■□□ 2.24
CPSF4-204ENST00000436336 METTL22Q9BUU2 404 aaPredicted RBP29.06■■■□□ 2.24
CPSF4-204ENST00000436336 LRRC4BQ9NT99 713 aa29.06■■■□□ 2.24
CPSF4-204ENST00000436336 TXNRD1Q16881 649 aa29.05■■■□□ 2.24
CPSF4-204ENST00000436336 ANKRD36CQ5JPF3 1778 aa29.05■■■□□ 2.24
CPSF4-204ENST00000436336 NEXNQ0ZGT2 675 aa29.04■■■□□ 2.24
CPSF4-204ENST00000436336 ZBTB40Q9NUA8 1239 aa29.03■■■□□ 2.24
CPSF4-204ENST00000436336 BCORQ6W2J9 1755 aa29.03■■■□□ 2.24
CPSF4-204ENST00000436336 LINS1Q8NG48 757 aa29.03■■■□□ 2.24
CPSF4-204ENST00000436336 UBR3Q6ZT12 1888 aa29.02■■■□□ 2.24
CPSF4-204ENST00000436336 COL15A1P39059 1388 aa29.02■■■□□ 2.24
CPSF4-204ENST00000436336 MAP3K15Q6ZN16 1313 aa29.02■■■□□ 2.24
CPSF4-204ENST00000436336 ALDH1L1O75891 902 aa29.02■■■□□ 2.24
CPSF4-204ENST00000436336 ZBTB3Q9H5J0 574 aa29.02■■■□□ 2.24
CPSF4-204ENST00000436336 IBTKQ9P2D0 1353 aaPredicted RBP29.01■■■□□ 2.23
CPSF4-204ENST00000436336 DZIP3Q86Y13 1208 aaKnown RBP29.01■■■□□ 2.23
CPSF4-204ENST00000436336 PROM2Q8N271 834 aa29.01■■■□□ 2.23
CPSF4-204ENST00000436336 RPS6KA4O75676 772 aa29■■■□□ 2.23
CPSF4-204ENST00000436336 MYD88Q99836 296 aa29■■■□□ 2.23
CPSF4-204ENST00000436336 ARXQ96QS3 562 aa29■■■□□ 2.23
CPSF4-204ENST00000436336 A0A087WZG4 1122 aa28.99■■■□□ 2.23
CPSF4-204ENST00000436336 ERVV-1B6SEH8 477 aa28.98■■■□□ 2.23
CPSF4-204ENST00000436336 GNPATO15228 680 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 IGKV5-2P06315 115 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 CCDC136Q96JN2 1154 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 MEIS3Q99687 375 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 TBC1D2BQ9UPU7 963 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 C4AP0C0L4 1744 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 CWF19L2Q2TBE0 894 aaKnown RBP28.97■■■□□ 2.23
CPSF4-204ENST00000436336 AK7Q96M32 723 aa28.97■■■□□ 2.23
CPSF4-204ENST00000436336 RTCBQ9Y3I0 505 aaKnown RBP28.97■■■□□ 2.23
CPSF4-204ENST00000436336 SCN7AQ01118 1682 aa28.96■■■□□ 2.23
CPSF4-204ENST00000436336 NEURL1BA8MQ27 555 aa28.96■■■□□ 2.23
CPSF4-204ENST00000436336 GNAI3P08754 354 aa28.96■■■□□ 2.23
CPSF4-204ENST00000436336 GIGYF2Q6Y7W6 1299 aaKnown RBP28.96■■■□□ 2.23
CPSF4-204ENST00000436336 SF3B2Q13435 895 aaKnown RBP28.95■■■□□ 2.23
CPSF4-204ENST00000436336 USP44Q9H0E7 712 aa28.95■■■□□ 2.23
CPSF4-204ENST00000436336 HSP90AB3PQ58FF7 597 aa28.94■■■□□ 2.22
CPSF4-204ENST00000436336 B4GALNT3Q6L9W6 998 aa28.94■■■□□ 2.22
CPSF4-204ENST00000436336 TCIRG1Q13488 830 aa28.94■■■□□ 2.22
CPSF4-204ENST00000436336 HLFQ16534 295 aa28.92■■■□□ 2.22
CPSF4-204ENST00000436336 PCDHB15Q9Y5E8 787 aa28.92■■■□□ 2.22
CPSF4-204ENST00000436336 ATP5J2-PTCD1G3V325 749 aa28.91■■■□□ 2.22
CPSF4-204ENST00000436336 CAMTA2O94983 1202 aa28.91■■■□□ 2.22
CPSF4-204ENST00000436336 ISCA1Q9BUE6 129 aa28.91■■■□□ 2.22
CPSF4-204ENST00000436336 C9orf78Q9NZ63 289 aaPredicted RBP28.91■■■□□ 2.22
CPSF4-204ENST00000436336 GCKRQ14397 625 aa28.91■■■□□ 2.22
CPSF4-204ENST00000436336 CAMKK2Q96RR4 588 aa28.91■■■□□ 2.22
CPSF4-204ENST00000436336 TUBGCP6Q96RT7 1819 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 RGL2O15211 777 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 UBTFL1P0CB47 393 aaPredicted RBP28.9■■■□□ 2.22
CPSF4-204ENST00000436336 ADRA2BP18089 450 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 BAG6P46379 1132 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 TRIM28Q13263 835 aaKnown RBP28.9■■■□□ 2.22
CPSF4-204ENST00000436336 CCDC191Q8NCU4 936 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 C1orf115Q9H7X2 142 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 UTYO14607 1347 aa28.9■■■□□ 2.22
CPSF4-204ENST00000436336 GRM8O00222 908 aa28.89■■■□□ 2.22
CPSF4-204ENST00000436336 GNAI2P04899 355 aa28.89■■■□□ 2.22
CPSF4-204ENST00000436336 EN1Q05925 392 aaPredicted RBP28.89■■■□□ 2.22
CPSF4-204ENST00000436336 CCDC125Q86Z20 511 aa28.89■■■□□ 2.22
CPSF4-204ENST00000436336 TRAPPC3LQ5T215 181 aa28.89■■■□□ 2.21
CPSF4-204ENST00000436336 CWC25Q9NXE8 425 aaPredicted RBP28.89■■■□□ 2.21
CPSF4-204ENST00000436336 NBPF7P0C2Y1 421 aaPredicted RBP28.88■■■□□ 2.21
CPSF4-204ENST00000436336 NARFQ9UHQ1 456 aa28.88■■■□□ 2.21
CPSF4-204ENST00000436336 ZNF652Q9Y2D9 606 aa28.88■■■□□ 2.21
CPSF4-204ENST00000436336 EZH2Q15910 746 aaKnown RBP28.87■■■□□ 2.21
CPSF4-204ENST00000436336 AMIGO3Q86WK7 504 aa28.87■■■□□ 2.21
CPSF4-204ENST00000436336 ARHGEF1Q92888 912 aaKnown RBP28.87■■■□□ 2.21
CPSF4-204ENST00000436336 HDAC5Q9UQL6 1122 aa28.87■■■□□ 2.21
CPSF4-204ENST00000436336 SSFA2P28290 1259 aa28.86■■■□□ 2.21
CPSF4-204ENST00000436336 CLEC4GQ6UXB4 293 aa28.86■■■□□ 2.21
CPSF4-204ENST00000436336 SMIM5Q71RC9 77 aa28.86■■■□□ 2.21
CPSF4-204ENST00000436336 AKT1S1Q96B36 256 aa28.85■■■□□ 2.21
CPSF4-204ENST00000436336 ZPR1O75312 459 aa28.84■■■□□ 2.21
CPSF4-204ENST00000436336 PHF14O94880 888 aa28.84■■■□□ 2.21
CPSF4-204ENST00000436336 RPAP2Q8IXW5 612 aaPredicted RBP28.84■■■□□ 2.21
CPSF4-204ENST00000436336 ZNF34Q8IZ26 560 aa28.84■■■□□ 2.21
CPSF4-204ENST00000436336 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.83■■■□□ 2.21
CPSF4-204ENST00000436336 RFC4P35249 363 aa28.83■■■□□ 2.21
CPSF4-204ENST00000436336 LRRFIP2Q9Y608 721 aaKnown RBP28.83■■■□□ 2.21
CPSF4-204ENST00000436336 QSER1Q2KHR3 1735 aa28.83■■■□□ 2.21
CPSF4-204ENST00000436336 RWDD1Q9H446 243 aaPredicted RBP28.83■■■□□ 2.21
CPSF4-204ENST00000436336 USP42Q9H9J4 1324 aaKnown RBP28.82■■■□□ 2.2
CPSF4-204ENST00000436336 HDAC1Q13547 482 aaPredicted RBP28.82■■■□□ 2.2
CPSF4-204ENST00000436336 ZNF827Q17R98 1081 aa28.82■■■□□ 2.2
CPSF4-204ENST00000436336 NLRP10Q86W26 655 aa28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 231.8 ms