RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 CCDC150Q8NCX0 1101 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 NEK1Q96PY6 1258 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 TRIM35Q9UPQ4 493 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 PIK3R4Q99570 1358 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 PI4KAP2A4QPH2 592 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 BIN1O00499 593 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 KIF5CO60282 957 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 KIF4BQ2VIQ3 1234 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 ZSCAN25Q6NSZ9 544 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 PI4KAP1Q8N8J0 262 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 DNAJC25Q9H1X3 360 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 KIAA0754O94854 1291 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 CCT2P78371 535 aaKnown RBP12.88□□□□□ -0.35
HPS4-202ENST00000398145 CCDC57Q2TAC2 916 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 OTUD7AQ8TE49 926 aaPredicted RBP12.88□□□□□ -0.35
HPS4-202ENST00000398145 PATL2C9JE40 543 aaKnown RBP12.88□□□□□ -0.35
HPS4-202ENST00000398145 ZNF500O60304 480 aaPredicted RBP12.88□□□□□ -0.35
HPS4-202ENST00000398145 ESCO1Q5FWF5 840 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 DEF6Q9H4E7 631 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 TMEM63CQ9P1W3 806 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 TATP17735 454 aaPredicted RBP12.87□□□□□ -0.35
HPS4-202ENST00000398145 STIM1Q13586 685 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 TCEANC2Q96MN5 208 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 NACAP1Q9BZK3 213 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 RBM8AQ9Y5S9 174 aaKnown RBP12.87□□□□□ -0.35
HPS4-202ENST00000398145 GOLGA6L9A6NEM1 432 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 USP8P40818 1118 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 WASF1Q92558 559 aa12.87□□□□□ -0.35
HPS4-202ENST00000398145 FAM177BA6PVY3 158 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 SLU7O95391 586 aaKnown RBP12.86□□□□□ -0.35
HPS4-202ENST00000398145 CNNM1Q9NRU3 951 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 CRACR2AQ9BSW2 395 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 IGSF3O75054 1194 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 PLCH2O75038 1416 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 KRT24Q2M2I5 525 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 CCDC181Q5TID7 509 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 IQCEQ6IPM2 695 aa12.86□□□□□ -0.35
HPS4-202ENST00000398145 NUP133Q8WUM0 1156 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 OGFRQ9NZT2 677 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 BRF1Q92994 677 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.85□□□□□ -0.35
HPS4-202ENST00000398145 V9GYY5 206 aaPredicted RBP12.85□□□□□ -0.35
HPS4-202ENST00000398145 KIF20AO95235 890 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 HSP90AB2PQ58FF8 381 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 ZNF397Q8NF99 534 aaPredicted RBP12.85□□□□□ -0.35
HPS4-202ENST00000398145 KIAA0556O60303 1618 aa12.85□□□□□ -0.35
HPS4-202ENST00000398145 EPS15P42566 896 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 GNG11P61952 73 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 FAM193AP78312 1265 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 LUZP1Q86V48 1076 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 CNNM3Q8NE01 707 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 CCDC148Q8NFR7 591 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 MAGI3Q5TCQ9 1506 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 FANCAO15360 1455 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 LUC7LQ9NQ29 371 aaKnown RBP12.84□□□□□ -0.35
HPS4-202ENST00000398145 IFIT1P09914 478 aaKnown RBP12.84□□□□□ -0.35
HPS4-202ENST00000398145 SYTL4Q96C24 671 aaPredicted RBP12.84□□□□□ -0.35
HPS4-202ENST00000398145 DNAI1Q9UI46 699 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 CEP131Q9UPN4 1083 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 KDM5CP41229 1560 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 A0A1W2PP64 1363 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 GOLGA6L10A6NI86 522 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 TUBB4AP04350 444 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 MAP9Q49MG5 647 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 HYPKQ9NX55 129 aa12.84□□□□□ -0.35
HPS4-202ENST00000398145 CABP4P57796 275 aa12.83□□□□□ -0.36
HPS4-202ENST00000398145 KLHL10Q6JEL2 608 aa12.83□□□□□ -0.36
HPS4-202ENST00000398145 BRD1O95696 1058 aa12.83□□□□□ -0.36
HPS4-202ENST00000398145 GOLGA8BA8MQT2 603 aa12.83□□□□□ -0.36
HPS4-202ENST00000398145 RIOK3O14730 519 aaKnown RBP12.83□□□□□ -0.36
HPS4-202ENST00000398145 POLR3DP05423 398 aaPredicted RBP12.83□□□□□ -0.36
HPS4-202ENST00000398145 FBXO31Q5XUX0 539 aaPredicted RBP12.83□□□□□ -0.36
HPS4-202ENST00000398145 ARFGAP3Q9NP61 516 aa12.83□□□□□ -0.36
HPS4-202ENST00000398145 ORC3Q9UBD5 711 aaPredicted RBP12.83□□□□□ -0.36
HPS4-202ENST00000398145 KIF6Q6ZMV9 814 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 KIAA1328Q86T90 577 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 UBAC1Q9BSL1 405 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 MAP3K2Q9Y2U5 619 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 SOS1Q07889 1333 aaPredicted RBP12.82□□□□□ -0.36
HPS4-202ENST00000398145 SAMD9Q5K651 1589 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 C17orf53Q8N3J3 647 aaPredicted RBP12.82□□□□□ -0.36
HPS4-202ENST00000398145 USHBP1Q8N6Y0 703 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 MRPS27Q92552 414 aaKnown RBP12.82□□□□□ -0.36
HPS4-202ENST00000398145 POTEB2H3BUK9 544 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 IDH1O75874 414 aaKnown RBP12.82□□□□□ -0.36
HPS4-202ENST00000398145 AOPEPQ8N6M6 819 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 MYD88Q99836 296 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 USP16Q9Y5T5 823 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 MAGI2Q86UL8 1455 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 LMAN1P49257 510 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 AMOTQ4VCS5 1084 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 TXLNBQ8N3L3 684 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 TMX4Q9H1E5 349 aaPredicted RBP12.82□□□□□ -0.36
HPS4-202ENST00000398145 MYO6Q9UM54 1294 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 ZFYVE9O95405 1425 aa12.82□□□□□ -0.36
HPS4-202ENST00000398145 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 KDM6BO15054 1643 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 PPFIA3O75145 1194 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 EIF5P55010 431 aaKnown RBP12.81□□□□□ -0.36
HPS4-202ENST00000398145 UBASH3AP57075 661 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms