RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 SRGNP10124 158 aa20.67■□□□□ 0.9
CHMP3-202ENST00000393773 PRKAR2BP31323 418 aa20.67■□□□□ 0.9
CHMP3-202ENST00000393773 STYK1Q6J9G0 422 aa20.67■□□□□ 0.9
CHMP3-202ENST00000393773 SETDB2Q96T68 719 aa20.67■□□□□ 0.9
CHMP3-202ENST00000393773 NUP98P52948 1817 aa20.67■□□□□ 0.9
CHMP3-202ENST00000393773 HSPA1AP0DMV8 641 aaKnown RBP20.66■□□□□ 0.9
CHMP3-202ENST00000393773 HSPA1BP0DMV9 641 aaKnown RBP20.66■□□□□ 0.9
CHMP3-202ENST00000393773 ST5P78524 1137 aa20.66■□□□□ 0.9
CHMP3-202ENST00000393773 DPY19L2Q6NUT2 758 aa20.66■□□□□ 0.9
CHMP3-202ENST00000393773 DZIP3Q86Y13 1208 aaKnown RBP20.66■□□□□ 0.9
CHMP3-202ENST00000393773 CNKSR1Q969H4 720 aa20.66■□□□□ 0.9
CHMP3-202ENST00000393773 BTBD11A6QL63 1104 aa20.65■□□□□ 0.9
CHMP3-202ENST00000393773 PIP4K2AP48426 406 aaPredicted RBP20.65■□□□□ 0.9
CHMP3-202ENST00000393773 PRAMEF22A3QJZ6 481 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 POTEIP0CG38 1075 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 POTEJP0CG39 1038 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 CNGB1Q14028 1251 aaPredicted RBP20.64■□□□□ 0.89
CHMP3-202ENST00000393773 TNS4Q8IZW8 715 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 MASTLQ96GX5 879 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 USP16Q9Y5T5 823 aa20.64■□□□□ 0.89
CHMP3-202ENST00000393773 NPHP1O15259 732 aa20.62■□□□□ 0.89
CHMP3-202ENST00000393773 DDNO94850 711 aaPredicted RBP20.62■□□□□ 0.89
CHMP3-202ENST00000393773 SOGA3Q5TF21 947 aa20.62■□□□□ 0.89
CHMP3-202ENST00000393773 CHADLQ6NUI6 762 aa20.62■□□□□ 0.89
CHMP3-202ENST00000393773 NPM2Q86SE8 214 aaKnown RBP20.62■□□□□ 0.89
CHMP3-202ENST00000393773 C7orf43Q8WVR3 580 aa20.62■□□□□ 0.89
CHMP3-202ENST00000393773 SNED1Q8TER0 1413 aa20.61■□□□□ 0.89
CHMP3-202ENST00000393773 CLEC4GQ6UXB4 293 aa20.61■□□□□ 0.89
CHMP3-202ENST00000393773 MCM10Q7L590 875 aa20.6■□□□□ 0.89
CHMP3-202ENST00000393773 NBPF5PQ86XG9 351 aaPredicted RBP20.6■□□□□ 0.89
CHMP3-202ENST00000393773 L3MBTL3Q96JM7 780 aaPredicted RBP20.6■□□□□ 0.89
CHMP3-202ENST00000393773 CREBZFQ9NS37 354 aa20.6■□□□□ 0.89
CHMP3-202ENST00000393773 KLRG2A4D1S0 409 aaPredicted RBP20.59■□□□□ 0.89
CHMP3-202ENST00000393773 CAPN15O75808 1086 aa20.59■□□□□ 0.89
CHMP3-202ENST00000393773 CCDC93Q567U6 631 aa20.59■□□□□ 0.89
CHMP3-202ENST00000393773 CFAP53Q96M91 514 aa20.59■□□□□ 0.89
CHMP3-202ENST00000393773 ZNF652Q9Y2D9 606 aa20.59■□□□□ 0.89
CHMP3-202ENST00000393773 PASKQ96RG2 1323 aa20.58■□□□□ 0.89
CHMP3-202ENST00000393773 NBPF26B4DH59 902 aa20.58■□□□□ 0.89
CHMP3-202ENST00000393773 RGL2O15211 777 aa20.58■□□□□ 0.89
CHMP3-202ENST00000393773 SNRPA1P09661 255 aaKnown RBP20.58■□□□□ 0.89
CHMP3-202ENST00000393773 NBPF10Q6P3W6 841 aaKnown RBP20.58■□□□□ 0.89
CHMP3-202ENST00000393773 NBPF15Q8N660 670 aa20.58■□□□□ 0.89
CHMP3-202ENST00000393773 ZNF541Q9H0D2 1346 aa20.57■□□□□ 0.88
CHMP3-202ENST00000393773 NPR1P16066 1061 aa20.57■□□□□ 0.88
CHMP3-202ENST00000393773 LTBP1Q14766 1721 aa20.57■□□□□ 0.88
CHMP3-202ENST00000393773 COL4A5P29400 1685 aa20.57■□□□□ 0.88
CHMP3-202ENST00000393773 CNTNAP1P78357 1384 aa20.57■□□□□ 0.88
CHMP3-202ENST00000393773 IQCA1LA6NCM1 817 aa20.56■□□□□ 0.88
CHMP3-202ENST00000393773 ABCC12Q96J65 1359 aa20.56■□□□□ 0.88
CHMP3-202ENST00000393773 FKBP4Q02790 459 aaKnown RBP eCLIP20.55■□□□□ 0.88
CHMP3-202ENST00000393773 DCTN1Q14203 1278 aa20.55■□□□□ 0.88
CHMP3-202ENST00000393773 OLFM4Q6UX06 510 aa20.55■□□□□ 0.88
CHMP3-202ENST00000393773 LDHDQ86WU2 507 aa20.55■□□□□ 0.88
CHMP3-202ENST00000393773 TAF1DQ9H5J8 278 aaPredicted RBP20.55■□□□□ 0.88
CHMP3-202ENST00000393773 MKRN1Q9UHC7 482 aaKnown RBP20.55■□□□□ 0.88
CHMP3-202ENST00000393773 NIP7Q9Y221 180 aaKnown RBP eCLIP20.55■□□□□ 0.88
CHMP3-202ENST00000393773 THSD7BQ9C0I4 1608 aa20.55■□□□□ 0.88
CHMP3-202ENST00000393773 RIC1Q4ADV7 1423 aa20.54■□□□□ 0.88
CHMP3-202ENST00000393773 U2AF1L5P0DN76 240 aaPredicted RBP20.54■□□□□ 0.88
CHMP3-202ENST00000393773 PPP2R1AP30153 589 aa20.54■□□□□ 0.88
CHMP3-202ENST00000393773 U2AF1Q01081 240 aaKnown RBP eCLIP20.54■□□□□ 0.88
CHMP3-202ENST00000393773 RTF1Q92541 710 aaKnown RBP20.54■□□□□ 0.88
CHMP3-202ENST00000393773 ZNF277Q9NRM2 450 aaPredicted RBP20.53■□□□□ 0.88
CHMP3-202ENST00000393773 NUDCQ9Y266 331 aa20.53■□□□□ 0.88
CHMP3-202ENST00000393773 LAMB2P55268 1798 aa20.52■□□□□ 0.88
CHMP3-202ENST00000393773 ANKRD36CQ5JPF3 1778 aa20.52■□□□□ 0.88
CHMP3-202ENST00000393773 HLFQ16534 295 aa20.52■□□□□ 0.88
CHMP3-202ENST00000393773 HTATSF1O43719 755 aaKnown RBP20.51■□□□□ 0.87
CHMP3-202ENST00000393773 TPTE2Q6XPS3 522 aa20.51■□□□□ 0.87
CHMP3-202ENST00000393773 TRPM7Q96QT4 1865 aa20.5■□□□□ 0.87
CHMP3-202ENST00000393773 IBTKQ9P2D0 1353 aaPredicted RBP20.5■□□□□ 0.87
CHMP3-202ENST00000393773 ITGBL1O95965 494 aaPredicted RBP20.5■□□□□ 0.87
CHMP3-202ENST00000393773 FAM177BA6PVY3 158 aa20.49■□□□□ 0.87
CHMP3-202ENST00000393773 CRY2Q49AN0 593 aa20.49■□□□□ 0.87
CHMP3-202ENST00000393773 RTKN2Q8IZC4 609 aa20.49■□□□□ 0.87
CHMP3-202ENST00000393773 FZD9O00144 591 aa20.48■□□□□ 0.87
CHMP3-202ENST00000393773 FOXN1O15353 648 aa20.48■□□□□ 0.87
CHMP3-202ENST00000393773 IARSP41252 1262 aaKnown RBP20.48■□□□□ 0.87
CHMP3-202ENST00000393773 HACL1Q9UJ83 578 aa20.48■□□□□ 0.87
CHMP3-202ENST00000393773 RNF123Q5XPI4 1314 aa20.48■□□□□ 0.87
CHMP3-202ENST00000393773 TAF7Q15545 349 aaPredicted RBP20.47■□□□□ 0.87
CHMP3-202ENST00000393773 TMEM88BA6NKF7 163 aa20.46■□□□□ 0.87
CHMP3-202ENST00000393773 EPHX2P34913 555 aa20.46■□□□□ 0.87
CHMP3-202ENST00000393773 EAPPQ56P03 285 aaPredicted RBP20.46■□□□□ 0.87
CHMP3-202ENST00000393773 PSMD1Q99460 953 aa20.46■□□□□ 0.87
CHMP3-202ENST00000393773 MIS18AQ9NYP9 233 aa20.46■□□□□ 0.87
CHMP3-202ENST00000393773 UBN2Q6ZU65 1347 aa20.46■□□□□ 0.87
CHMP3-202ENST00000393773 ALDH1B1P30837 517 aa20.45■□□□□ 0.86
CHMP3-202ENST00000393773 VEGFBP49765 207 aa20.45■□□□□ 0.86
CHMP3-202ENST00000393773 SYNE4Q8N205 404 aa20.45■□□□□ 0.86
CHMP3-202ENST00000393773 MAP3K15Q6ZN16 1313 aa20.45■□□□□ 0.86
CHMP3-202ENST00000393773 ERVV-1B6SEH8 477 aa20.44■□□□□ 0.86
CHMP3-202ENST00000393773 NUTM1Q86Y26 1132 aa20.44■□□□□ 0.86
CHMP3-202ENST00000393773 GPC2Q8N158 579 aa20.44■□□□□ 0.86
CHMP3-202ENST00000393773 NYXQ9GZU5 481 aa20.44■□□□□ 0.86
CHMP3-202ENST00000393773 SLC51AQ86UW1 340 aa20.43■□□□□ 0.86
CHMP3-202ENST00000393773 GTF2E1P29083 439 aaPredicted RBP20.42■□□□□ 0.86
CHMP3-202ENST00000393773 MAP1SQ66K74 1059 aaPredicted RBP20.42■□□□□ 0.86
CHMP3-202ENST00000393773 TTLL7Q6ZT98 887 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms