RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 MCM10Q7L590 875 aa18.45■□□□□ 0.54
CXCL12-202ENST00000374426 LTBP3Q9NS15 1303 aa18.45■□□□□ 0.54
CXCL12-202ENST00000374426 NPHP1O15259 732 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 PPP2R1AP30153 589 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 ST5P78524 1137 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 ERFEQ4G0M1 354 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 STYK1Q6J9G0 422 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 DPY19L2Q6NUT2 758 aa18.44■□□□□ 0.54
CXCL12-202ENST00000374426 SNRPA1P09661 255 aaKnown RBP18.43■□□□□ 0.54
CXCL12-202ENST00000374426 PRPF40BQ6NWY9 871 aaKnown RBP18.43■□□□□ 0.54
CXCL12-202ENST00000374426 CLEC4GQ6UXB4 293 aa18.43■□□□□ 0.54
CXCL12-202ENST00000374426 RTF1Q92541 710 aaKnown RBP18.43■□□□□ 0.54
CXCL12-202ENST00000374426 CNKSR1Q969H4 720 aa18.43■□□□□ 0.54
CXCL12-202ENST00000374426 TAOK3Q9H2K8 898 aa18.43■□□□□ 0.54
CXCL12-202ENST00000374426 SLX4Q8IY92 1834 aa18.43■□□□□ 0.54
CXCL12-202ENST00000374426 DCTN1Q14203 1278 aa18.42■□□□□ 0.54
CXCL12-202ENST00000374426 MASTLQ96GX5 879 aa18.42■□□□□ 0.54
CXCL12-202ENST00000374426 DICER1Q9UPY3 1922 aaKnown RBP18.41■□□□□ 0.54
CXCL12-202ENST00000374426 NBPF26B4DH59 902 aa18.41■□□□□ 0.54
CXCL12-202ENST00000374426 NBPF10Q6P3W6 841 aaKnown RBP18.41■□□□□ 0.54
CXCL12-202ENST00000374426 NBPF5PQ86XG9 351 aaPredicted RBP18.41■□□□□ 0.54
CXCL12-202ENST00000374426 NBPF15Q8N660 670 aa18.41■□□□□ 0.54
CXCL12-202ENST00000374426 COL13A1Q5TAT6 717 aaPredicted RBP18.4■□□□□ 0.54
CXCL12-202ENST00000374426 C7orf43Q8WVR3 580 aa18.4■□□□□ 0.54
CXCL12-202ENST00000374426 ZNF652Q9Y2D9 606 aa18.4■□□□□ 0.54
CXCL12-202ENST00000374426 HTATSF1O43719 755 aaKnown RBP18.39■□□□□ 0.53
CXCL12-202ENST00000374426 SOGA3Q5TF21 947 aa18.39■□□□□ 0.53
CXCL12-202ENST00000374426 ARFGEF2Q9Y6D5 1785 aa18.38■□□□□ 0.53
CXCL12-202ENST00000374426 CACNA1SQ13698 1873 aa18.38■□□□□ 0.53
CXCL12-202ENST00000374426 KLRG2A4D1S0 409 aaPredicted RBP18.38■□□□□ 0.53
CXCL12-202ENST00000374426 DDNO94850 711 aaPredicted RBP18.38■□□□□ 0.53
CXCL12-202ENST00000374426 RGL2O15211 777 aa18.37■□□□□ 0.53
CXCL12-202ENST00000374426 NPR1P16066 1061 aa18.37■□□□□ 0.53
CXCL12-202ENST00000374426 TAF7Q15545 349 aaPredicted RBP18.37■□□□□ 0.53
CXCL12-202ENST00000374426 NIP7Q9Y221 180 aaKnown RBP eCLIP18.37■□□□□ 0.53
CXCL12-202ENST00000374426 POTEIP0CG38 1075 aa18.36■□□□□ 0.53
CXCL12-202ENST00000374426 POTEJP0CG39 1038 aa18.36■□□□□ 0.53
CXCL12-202ENST00000374426 TPTE2Q6XPS3 522 aa18.36■□□□□ 0.53
CXCL12-202ENST00000374426 MIS18AQ9NYP9 233 aa18.36■□□□□ 0.53
CXCL12-202ENST00000374426 HLFQ16534 295 aa18.35■□□□□ 0.53
CXCL12-202ENST00000374426 CCDC93Q567U6 631 aa18.35■□□□□ 0.53
CXCL12-202ENST00000374426 CHADLQ6NUI6 762 aa18.34■□□□□ 0.53
CXCL12-202ENST00000374426 OLFM4Q6UX06 510 aa18.34■□□□□ 0.53
CXCL12-202ENST00000374426 FAM177BA6PVY3 158 aa18.33■□□□□ 0.52
CXCL12-202ENST00000374426 HSPA1AP0DMV8 641 aaKnown RBP18.32■□□□□ 0.52
CXCL12-202ENST00000374426 HSPA1BP0DMV9 641 aaKnown RBP18.32■□□□□ 0.52
CXCL12-202ENST00000374426 FKBP4Q02790 459 aaKnown RBP eCLIP18.32■□□□□ 0.52
CXCL12-202ENST00000374426 L3MBTL3Q96JM7 780 aaPredicted RBP18.32■□□□□ 0.52
CXCL12-202ENST00000374426 ZNF277Q9NRM2 450 aaPredicted RBP18.31■□□□□ 0.52
CXCL12-202ENST00000374426 CREBZFQ9NS37 354 aa18.31■□□□□ 0.52
CXCL12-202ENST00000374426 LAMB4A4D0S4 1761 aa18.31■□□□□ 0.52
CXCL12-202ENST00000374426 IQCA1LA6NCM1 817 aa18.3■□□□□ 0.52
CXCL12-202ENST00000374426 PLEKHF1Q96S99 279 aa18.3■□□□□ 0.52
CXCL12-202ENST00000374426 TAF1DQ9H5J8 278 aaPredicted RBP18.3■□□□□ 0.52
CXCL12-202ENST00000374426 ABCC12Q96J65 1359 aa18.3■□□□□ 0.52
CXCL12-202ENST00000374426 ZNF541Q9H0D2 1346 aa18.29■□□□□ 0.52
CXCL12-202ENST00000374426 GTF2E1P29083 439 aaPredicted RBP18.29■□□□□ 0.52
CXCL12-202ENST00000374426 EIF4A1P60842 406 aaKnown RBP18.29■□□□□ 0.52
CXCL12-202ENST00000374426 CRY2Q49AN0 593 aa18.29■□□□□ 0.52
CXCL12-202ENST00000374426 RTKN2Q8IZC4 609 aa18.29■□□□□ 0.52
CXCL12-202ENST00000374426 NGEFQ8N5V2 710 aa18.29■□□□□ 0.52
CXCL12-202ENST00000374426 PNISRQ8TF01 805 aaKnown RBP18.29■□□□□ 0.52
CXCL12-202ENST00000374426 KDM3BQ7LBC6 1761 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 DLG5Q8TDM6 1919 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 ERVV-1B6SEH8 477 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 ALDH1B1P30837 517 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 LDHDQ86WU2 507 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 NUTM1Q86Y26 1132 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 TNS4Q8IZW8 715 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 THUMPD2Q9BTF0 503 aaKnown RBP18.28■□□□□ 0.52
CXCL12-202ENST00000374426 SNED1Q8TER0 1413 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 SCN4AP35499 1836 aa18.28■□□□□ 0.52
CXCL12-202ENST00000374426 MAP3K15Q6ZN16 1313 aa18.27■□□□□ 0.52
CXCL12-202ENST00000374426 PASKQ96RG2 1323 aa18.27■□□□□ 0.52
CXCL12-202ENST00000374426 NEFMP07197 916 aa18.27■□□□□ 0.52
CXCL12-202ENST00000374426 NFE2L2Q16236 605 aa18.27■□□□□ 0.52
CXCL12-202ENST00000374426 TTLL7Q6ZT98 887 aa18.27■□□□□ 0.52
CXCL12-202ENST00000374426 MKRN1Q9UHC7 482 aaKnown RBP18.27■□□□□ 0.52
CXCL12-202ENST00000374426 RRP7AQ9Y3A4 280 aaKnown RBP18.27■□□□□ 0.52
CXCL12-202ENST00000374426 IARSP41252 1262 aaKnown RBP18.26■□□□□ 0.51
CXCL12-202ENST00000374426 SYNE4Q8N205 404 aa18.26■□□□□ 0.51
CXCL12-202ENST00000374426 NYXQ9GZU5 481 aa18.26■□□□□ 0.51
CXCL12-202ENST00000374426 UBN2Q6ZU65 1347 aa18.25■□□□□ 0.51
CXCL12-202ENST00000374426 FZD9O00144 591 aa18.25■□□□□ 0.51
CXCL12-202ENST00000374426 MYL6BP14649 208 aa18.25■□□□□ 0.51
CXCL12-202ENST00000374426 NUP98P52948 1817 aa18.25■□□□□ 0.51
CXCL12-202ENST00000374426 ITGBL1O95965 494 aaPredicted RBP18.24■□□□□ 0.51
CXCL12-202ENST00000374426 GPTP24298 496 aa18.24■□□□□ 0.51
CXCL12-202ENST00000374426 EAPPQ56P03 285 aaPredicted RBP18.24■□□□□ 0.51
CXCL12-202ENST00000374426 KIF6Q6ZMV9 814 aa18.24■□□□□ 0.51
CXCL12-202ENST00000374426 PSMD1Q99460 953 aa18.24■□□□□ 0.51
CXCL12-202ENST00000374426 ZBTB3Q9H5J0 574 aa18.24■□□□□ 0.51
CXCL12-202ENST00000374426 HACL1Q9UJ83 578 aa18.24■□□□□ 0.51
CXCL12-202ENST00000374426 RIC1Q4ADV7 1423 aa18.23■□□□□ 0.51
CXCL12-202ENST00000374426 CNTNAP1P78357 1384 aa18.23■□□□□ 0.51
CXCL12-202ENST00000374426 IBTKQ9P2D0 1353 aaPredicted RBP18.23■□□□□ 0.51
CXCL12-202ENST00000374426 CAPN15O75808 1086 aa18.23■□□□□ 0.51
CXCL12-202ENST00000374426 HOXA10P31260 410 aaPredicted RBP18.23■□□□□ 0.51
CXCL12-202ENST00000374426 EPHX2P34913 555 aa18.23■□□□□ 0.51
CXCL12-202ENST00000374426 RNF123Q5XPI4 1314 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms