RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 UBR3Q6ZT12 1888 aa5.17□□□□□ -1.58
LIG4-201ENST00000356922 TEX13AQ9BXU3 409 aaPredicted RBP5.17□□□□□ -1.58
LIG4-201ENST00000356922 ZNF831Q5JPB2 1677 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 RREB1Q92766 1687 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 SOCS7O14512 581 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 ALDH1L2Q3SY69 923 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 ANKRD13DQ6ZTN6 518 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 DZIP3Q86Y13 1208 aaKnown RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 AK7Q96M32 723 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 MAP3K2Q9Y2U5 619 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 RTCBQ9Y3I0 505 aaKnown RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 GYS1P13807 737 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 FKBP5Q13451 457 aaPredicted RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 RTL5Q5HYW3 569 aaPredicted RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 TBC1D9BQ66K14 1250 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 COL15A1P39059 1388 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 CICQ96RK0 1608 aaPredicted RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 UBN2Q6ZU65 1347 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 PCNTO95613 3336 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 GPTP24298 496 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 BRPF1P55201 1214 aaPredicted RBP5.16□□□□□ -1.58
LIG4-201ENST00000356922 TRAPPC3LQ5T215 181 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 BICDL1Q6ZP65 573 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 SLC51AQ86UW1 340 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 HYPKQ9NX55 129 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 LAMB4A4D0S4 1761 aa5.16□□□□□ -1.58
LIG4-201ENST00000356922 RNF123Q5XPI4 1314 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 FAM177BA6PVY3 158 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 MSH5O43196 834 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 ZBTB7AO95365 584 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 SLC4A10Q6U841 1118 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 STK31Q9BXU1 1019 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 BEND3Q5T5X7 828 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 ATF7IPQ6VMQ6 1270 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 TMEM57Q8N5G2 664 aa5.15□□□□□ -1.58
LIG4-201ENST00000356922 USP42Q9H9J4 1324 aaKnown RBP5.15□□□□□ -1.59
LIG4-201ENST00000356922 CT47B1P0C2W7 299 aaPredicted RBP5.15□□□□□ -1.59
LIG4-201ENST00000356922 DDR1Q08345 913 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 KSR2Q6VAB6 950 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 NARFQ9UHQ1 456 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 ATF5Q9Y2D1 282 aaPredicted RBP5.15□□□□□ -1.59
LIG4-201ENST00000356922 RGPD3A6NKT7 1758 aaPredicted RBP5.15□□□□□ -1.59
LIG4-201ENST00000356922 RGPD4Q7Z3J3 1758 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 C4AP0C0L4 1744 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 MAP3K15Q6ZN16 1313 aa5.15□□□□□ -1.59
LIG4-201ENST00000356922 NBPF7P0C2Y1 421 aaPredicted RBP5.14□□□□□ -1.59
LIG4-201ENST00000356922 RFC4P35249 363 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 RRP1P56182 461 aaKnown RBP5.14□□□□□ -1.59
LIG4-201ENST00000356922 NFIXQ14938 502 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 GIGYF2Q6Y7W6 1299 aaKnown RBP5.14□□□□□ -1.59
LIG4-201ENST00000356922 PLBD2Q8NHP8 589 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 MYD88Q99836 296 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 COG6Q9Y2V7 657 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 SSFA2P28290 1259 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 TM4SF1P30408 202 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 SUSD4Q5VX71 490 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 C3orf67Q6ZVT6 689 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 RIC3Q7Z5B4 369 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 NUTM1Q86Y26 1132 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 KAZALD1Q96I82 304 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 ZNF34Q8IZ26 560 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 DNAAF4Q8WXU2 420 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 FAM89AQ96GI7 184 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 USP44Q9H0E7 712 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 STK32BQ9NY57 414 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 ERBB4Q15303 1308 aa5.14□□□□□ -1.59
LIG4-201ENST00000356922 NUP98P52948 1817 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 TCIRG1Q13488 830 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 EPHA10Q5JZY3 1008 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ISCA1Q9BUE6 129 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 METTL22Q9BUU2 404 aaPredicted RBP5.13□□□□□ -1.59
LIG4-201ENST00000356922 NEURL1BA8MQ27 555 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ZKSCAN2Q63HK3 967 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 NPM2Q86SE8 214 aaKnown RBP5.13□□□□□ -1.59
LIG4-201ENST00000356922 NLRP10Q86W26 655 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 MEIS3Q99687 375 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ABCC4O15439 1325 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ZBTB7BO15156 539 aaPredicted RBP5.13□□□□□ -1.59
LIG4-201ENST00000356922 CASP7P55210 303 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 EXOC6Q8TAG9 804 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 SGIP1Q9BQI5 828 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 C1orf115Q9H7X2 142 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 NIP7Q9Y221 180 aaKnown RBP eCLIP5.13□□□□□ -1.59
LIG4-201ENST00000356922 CARMIL3Q8ND23 1372 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 COL4A1P02462 1669 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ERVV-1B6SEH8 477 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ZPR1O75312 459 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 PTGER2P43116 358 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 DZIP1LQ8IYY4 767 aaKnown RBP5.13□□□□□ -1.59
LIG4-201ENST00000356922 ARHGAP45Q92619 1136 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 CRBNQ96SW2 442 aa5.13□□□□□ -1.59
LIG4-201ENST00000356922 ARFGEF2Q9Y6D5 1785 aa5.12□□□□□ -1.59
LIG4-201ENST00000356922 POLRMTO00411 1230 aaKnown RBP5.12□□□□□ -1.59
LIG4-201ENST00000356922 MMP10P09238 476 aa5.12□□□□□ -1.59
LIG4-201ENST00000356922 GCKRQ14397 625 aa5.12□□□□□ -1.59
LIG4-201ENST00000356922 INTS3Q68E01 1043 aaKnown RBP5.12□□□□□ -1.59
LIG4-201ENST00000356922 PTPRCP08575 1304 aa5.12□□□□□ -1.59
LIG4-201ENST00000356922 HCLS1P14317 486 aaPredicted RBP5.12□□□□□ -1.59
LIG4-201ENST00000356922 CCDC85AQ96PX6 553 aaPredicted RBP5.12□□□□□ -1.59
LIG4-201ENST00000356922 CACNA1FO60840 1977 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms