RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 HYPKQ9NX55 129 aa28.27■■■□□ 2.12
TSKU-201ENST00000333090 KIF3AQ9Y496 699 aa28.27■■■□□ 2.12
TSKU-201ENST00000333090 NBPF7P0C2Y1 421 aaPredicted RBP28.26■■■□□ 2.11
TSKU-201ENST00000333090 MTMR6Q9Y217 621 aa28.26■■■□□ 2.11
TSKU-201ENST00000333090 VPS37CA5D8V6 355 aaPredicted RBP28.25■■■□□ 2.11
TSKU-201ENST00000333090 SPC24Q8NBT2 197 aa28.25■■■□□ 2.11
TSKU-201ENST00000333090 DIAPH3Q9NSV4 1193 aa28.25■■■□□ 2.11
TSKU-201ENST00000333090 PXDNLA1KZ92 1463 aa28.25■■■□□ 2.11
TSKU-201ENST00000333090 TAF7Q15545 349 aaPredicted RBP28.25■■■□□ 2.11
TSKU-201ENST00000333090 JAKMIP1Q96N16 626 aaKnown RBP28.25■■■□□ 2.11
TSKU-201ENST00000333090 PDRG1Q9NUG6 133 aa28.24■■■□□ 2.11
TSKU-201ENST00000333090 EIF2S2P20042 333 aaKnown RBP28.23■■■□□ 2.11
TSKU-201ENST00000333090 ADCK5Q3MIX3 580 aa28.23■■■□□ 2.11
TSKU-201ENST00000333090 PRPF40BQ6NWY9 871 aaKnown RBP28.23■■■□□ 2.11
TSKU-201ENST00000333090 FMN2Q9NZ56 1722 aa28.23■■■□□ 2.11
TSKU-201ENST00000333090 OS9Q13438 667 aaPredicted RBP28.22■■■□□ 2.11
TSKU-201ENST00000333090 DDX54Q8TDD1 881 aaKnown RBP28.22■■■□□ 2.11
TSKU-201ENST00000333090 KCNF1Q9H3M0 494 aa28.22■■■□□ 2.11
TSKU-201ENST00000333090 PYCARDQ9ULZ3 195 aa28.22■■■□□ 2.11
TSKU-201ENST00000333090 TTC21AQ8NDW8 1320 aa28.22■■■□□ 2.11
TSKU-201ENST00000333090 NLRP6P59044 892 aa28.22■■■□□ 2.11
TSKU-201ENST00000333090 PTH1RQ03431 593 aa28.22■■■□□ 2.11
TSKU-201ENST00000333090 C14orf37Q86TY3 774 aa28.21■■■□□ 2.11
TSKU-201ENST00000333090 KIAA1524Q8TCG1 905 aa28.21■■■□□ 2.11
TSKU-201ENST00000333090 TOPAZ1Q8N9V7 1692 aa28.21■■■□□ 2.11
TSKU-201ENST00000333090 CHMP3Q9Y3E7 222 aa28.21■■■□□ 2.11
TSKU-201ENST00000333090 MAP3K5Q99683 1374 aa28.21■■■□□ 2.11
TSKU-201ENST00000333090 GLRX3O76003 335 aaKnown RBP28.2■■■□□ 2.1
TSKU-201ENST00000333090 CCDC192P0DO97 292 aa28.2■■■□□ 2.1
TSKU-201ENST00000333090 KCNA6P17658 529 aa28.2■■■□□ 2.1
TSKU-201ENST00000333090 VPS53Q5VIR6 699 aa28.2■■■□□ 2.1
TSKU-201ENST00000333090 CYP46A1Q9Y6A2 500 aa28.2■■■□□ 2.1
TSKU-201ENST00000333090 CACNA1FO60840 1977 aa28.19■■■□□ 2.1
TSKU-201ENST00000333090 USHBP1Q8N6Y0 703 aa28.19■■■□□ 2.1
TSKU-201ENST00000333090 NECAB1Q8N987 351 aa28.19■■■□□ 2.1
TSKU-201ENST00000333090 RUFY2Q8WXA3 655 aa28.19■■■□□ 2.1
TSKU-201ENST00000333090 BCL2L12Q9HB09 334 aa28.19■■■□□ 2.1
TSKU-201ENST00000333090 ZSCAN31Q96LW9 406 aaPredicted RBP28.18■■■□□ 2.1
TSKU-201ENST00000333090 SH2B1Q9NRF2 756 aaPredicted RBP28.18■■■□□ 2.1
TSKU-201ENST00000333090 LRRC37A3O60309 1634 aa28.18■■■□□ 2.1
TSKU-201ENST00000333090 CHAF1AQ13111 956 aaPredicted RBP28.17■■■□□ 2.1
TSKU-201ENST00000333090 ME3Q16798 604 aa28.17■■■□□ 2.1
TSKU-201ENST00000333090 HSP90AB4PQ58FF6 505 aa28.17■■■□□ 2.1
TSKU-201ENST00000333090 ST3GAL1Q11201 340 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 RGPD8O14715 1765 aaPredicted RBP28.16■■■□□ 2.1
TSKU-201ENST00000333090 PI4KAP2A4QPH2 592 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 GOLGA6L6A8MZA4 724 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 CBX1P83916 185 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 PPP4R3BQ5MIZ7 849 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 TTC41PQ6P2S7 1318 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 FERMT3Q86UX7 667 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 PI4KAP1Q8N8J0 262 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 ZSWIM6Q9HCJ5 1215 aa28.16■■■□□ 2.1
TSKU-201ENST00000333090 TPM3P06753 285 aa28.15■■■□□ 2.1
TSKU-201ENST00000333090 CAMK4Q16566 473 aa28.15■■■□□ 2.1
TSKU-201ENST00000333090 CLASRPQ8N2M8 674 aaKnown RBP28.14■■■□□ 2.1
TSKU-201ENST00000333090 DNAAF4Q8WXU2 420 aa28.14■■■□□ 2.1
TSKU-201ENST00000333090 BEND3Q5T5X7 828 aa28.14■■■□□ 2.1
TSKU-201ENST00000333090 LARP1BQ659C4 914 aaKnown RBP28.14■■■□□ 2.1
TSKU-201ENST00000333090 TTC6Q86TZ1 520 aa28.14■■■□□ 2.1
TSKU-201ENST00000333090 BABAM1Q9NWV8 329 aa28.14■■■□□ 2.1
TSKU-201ENST00000333090 CHPF2Q9P2E5 772 aa28.14■■■□□ 2.1
TSKU-201ENST00000333090 N4BP2Q86UW6 1770 aaPredicted RBP28.14■■■□□ 2.09
TSKU-201ENST00000333090 RIOK3O14730 519 aaKnown RBP28.13■■■□□ 2.09
TSKU-201ENST00000333090 FAM173BQ6P4H8 233 aa28.13■■■□□ 2.09
TSKU-201ENST00000333090 HOXC9P31274 260 aa28.13■■■□□ 2.09
TSKU-201ENST00000333090 KLHL34Q8N239 644 aa28.13■■■□□ 2.09
TSKU-201ENST00000333090 FAM200AQ8TCP9 573 aa28.13■■■□□ 2.09
TSKU-201ENST00000333090 ANXA1P04083 346 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 ZKSCAN1P17029 563 aaPredicted RBP28.12■■■□□ 2.09
TSKU-201ENST00000333090 KRT85P78386 507 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 TM6SF1Q9BZW5 370 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 USP42Q9H9J4 1324 aaKnown RBP28.12■■■□□ 2.09
TSKU-201ENST00000333090 KCNJ4P48050 445 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 MAP3K11Q16584 847 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 NUP62CLQ9H1M0 184 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 ECHDC1Q9NTX5 307 aa28.12■■■□□ 2.09
TSKU-201ENST00000333090 TPCN1Q9ULQ1 816 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 TBX22Q9Y458 520 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 LIG1P18858 919 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 PTGS1P23219 599 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 CDC37L1Q7L3B6 337 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 LUZP1Q86V48 1076 aa28.11■■■□□ 2.09
TSKU-201ENST00000333090 ZHX1Q9UKY1 873 aaPredicted RBP28.11■■■□□ 2.09
TSKU-201ENST00000333090 ZSCAN20P17040 1043 aaPredicted RBP28.1■■■□□ 2.09
TSKU-201ENST00000333090 ATP2B3Q16720 1220 aa28.1■■■□□ 2.09
TSKU-201ENST00000333090 ABTB2Q8N961 1025 aa28.1■■■□□ 2.09
TSKU-201ENST00000333090 IFIT2P09913 472 aaKnown RBP28.09■■■□□ 2.09
TSKU-201ENST00000333090 TYRO3Q06418 890 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 NECTIN1Q15223 517 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 CKAP2LQ8IYA6 745 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 RBM8AQ9Y5S9 174 aaKnown RBP28.09■■■□□ 2.09
TSKU-201ENST00000333090 CCDC171Q6TFL3 1326 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 PDCL2Q8N4E4 241 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 MRVI1Q9Y6F6 885 aa28.09■■■□□ 2.09
TSKU-201ENST00000333090 DMTNQ08495 405 aa28.08■■■□□ 2.09
TSKU-201ENST00000333090 GPATCH3Q96I76 525 aa28.08■■■□□ 2.09
TSKU-201ENST00000333090 PA2G4Q9UQ80 394 aaKnown RBP28.08■■■□□ 2.09
TSKU-201ENST00000333090 COL9A3Q14050 684 aaPredicted RBP28.07■■■□□ 2.08
TSKU-201ENST00000333090 CREB3L3Q68CJ9 461 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms