RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 SNX21Q969T3 373 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 ECHDC1Q9NTX5 307 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 PPP1R1BQ9UD71 204 aaPredicted RBP13.5□□□□□ -0.25
NOD1-201ENST00000222823 PI4KAP2A4QPH2 592 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 PI4KAP1Q8N8J0 262 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 ERCC4Q92889 916 aaPredicted RBP13.5□□□□□ -0.25
NOD1-201ENST00000222823 TSPYL6Q8N831 410 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 SCAND2PQ9GZW5 306 aaPredicted RBP13.5□□□□□ -0.25
NOD1-201ENST00000222823 EDC4Q6P2E9 1401 aaKnown RBP13.5□□□□□ -0.25
NOD1-201ENST00000222823 NAPBQ9H115 298 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 HECW2Q9P2P5 1572 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 HSP90AB2PQ58FF8 381 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 KRT28Q7Z3Y7 464 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 PIBF1Q8WXW3 757 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 TNPO1Q92973 898 aaKnown RBP13.49□□□□□ -0.25
NOD1-201ENST00000222823 BMP2KQ9NSY1 1161 aaPredicted RBP13.49□□□□□ -0.25
NOD1-201ENST00000222823 TRMT112Q9UI30 125 aaKnown RBP13.49□□□□□ -0.25
NOD1-201ENST00000222823 LIMCH1Q9UPQ0 1083 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 MINDY4BA8MYZ0 360 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 HSP90AB3PQ58FF7 597 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 TTC22Q5TAA0 569 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 CCDC112Q8NEF3 446 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 ZRANB1Q9UGI0 708 aa13.49□□□□□ -0.25
NOD1-201ENST00000222823 ZBTB7BO15156 539 aaPredicted RBP13.48□□□□□ -0.25
NOD1-201ENST00000222823 CBFA2T2O43439 604 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 SSBP05455 408 aaKnown RBP eCLIP13.48□□□□□ -0.25
NOD1-201ENST00000222823 CAVIN4Q5BKX8 364 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 IFNL2Q8IZJ0 200 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 ANKRD44Q8N8A2 993 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 ZBTB3Q9H5J0 574 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 MAP3K12Q12852 859 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 SF3B2Q13435 895 aaKnown RBP13.48□□□□□ -0.25
NOD1-201ENST00000222823 EIF4A2Q14240 407 aaKnown RBP13.48□□□□□ -0.25
NOD1-201ENST00000222823 PLEKHF1Q96S99 279 aa13.48□□□□□ -0.25
NOD1-201ENST00000222823 IL13P35225 146 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 PPP1R42Q7Z4L9 355 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 LUC7LQ9NQ29 371 aaKnown RBP13.47□□□□□ -0.25
NOD1-201ENST00000222823 CEP152O94986 1710 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 TTC21AQ8NDW8 1320 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 HMGB1P09429 215 aaKnown RBP13.47□□□□□ -0.25
NOD1-201ENST00000222823 SYCP1Q15431 976 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 DEF6Q9H4E7 631 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 MAP3K2Q9Y2U5 619 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 ABCA6Q8N139 1617 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 ABCC3O15438 1527 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 TANGO6Q9C0B7 1094 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 CCDC196A0A1B0GTZ2 297 aa13.47□□□□□ -0.25
NOD1-201ENST00000222823 PATL2C9JE40 543 aaKnown RBP13.47□□□□□ -0.25
NOD1-201ENST00000222823 ANXA1P04083 346 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 TMEM132AQ24JP5 1023 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 FAM177A1Q8N128 213 aaPredicted RBP13.46□□□□□ -0.25
NOD1-201ENST00000222823 SSFA2P28290 1259 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 CAMK4Q16566 473 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 UBE3BQ7Z3V4 1068 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 CNKSR2Q8WXI2 1034 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 EVI5LQ96CN4 794 aa13.46□□□□□ -0.25
NOD1-201ENST00000222823 ADAMTS2O95450 1211 aa13.46□□□□□ -0.26
NOD1-201ENST00000222823 C8orf76Q96K31 380 aa13.46□□□□□ -0.26
NOD1-201ENST00000222823 DCTPP1Q9H773 170 aa13.46□□□□□ -0.26
NOD1-201ENST00000222823 ABCA9Q8IUA7 1624 aa13.46□□□□□ -0.26
NOD1-201ENST00000222823 SMTNL1A8MU46 457 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 ATP5J2-PTCD1G3V325 749 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 ZNF213O14771 459 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 ZPR1O75312 459 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 SETBP1Q9Y6X0 1596 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 EXOC5O00471 708 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 GPTP24298 496 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 ZNF287Q9HBT7 754 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 ANKRD18BA2A2Z9 1011 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 CCDC82Q8N4S0 544 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 CEP131Q9UPN4 1083 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 CFAP100Q494V2 611 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 NOM1Q5C9Z4 860 aaKnown RBP13.45□□□□□ -0.26
NOD1-201ENST00000222823 LDHAL6AQ6ZMR3 332 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 MYO6Q9UM54 1294 aa13.45□□□□□ -0.26
NOD1-201ENST00000222823 RBM25P49756 843 aaKnown RBP13.44□□□□□ -0.26
NOD1-201ENST00000222823 PDCL3Q9H2J4 239 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 MKNK2Q9HBH9 465 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 PIK3R4Q99570 1358 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 LMTK2Q8IWU2 1503 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 IQGAP1P46940 1657 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 ADGRB3O60242 1522 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 USP5P45974 858 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 RBM10P98175 930 aaKnown RBP13.44□□□□□ -0.26
NOD1-201ENST00000222823 YEATS2Q9ULM3 1422 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 GUCY1B3Q02153 619 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 ZSCAN30Q86W11 494 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 IQCA1Q86XH1 822 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 ANKRD24Q8TF21 1146 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 MEIS3Q99687 375 aa13.44□□□□□ -0.26
NOD1-201ENST00000222823 LARP6Q9BRS8 491 aaKnown RBP13.44□□□□□ -0.26
NOD1-201ENST00000222823 HMGB2P26583 209 aaKnown RBP13.43□□□□□ -0.26
NOD1-201ENST00000222823 RDXP35241 583 aaKnown RBP13.43□□□□□ -0.26
NOD1-201ENST00000222823 TSHZ3Q63HK5 1081 aa13.43□□□□□ -0.26
NOD1-201ENST00000222823 CADPS2Q86UW7 1296 aa13.43□□□□□ -0.26
NOD1-201ENST00000222823 SLC5A1P13866 664 aa13.43□□□□□ -0.26
NOD1-201ENST00000222823 CTCFLQ8NI51 663 aaPredicted RBP13.43□□□□□ -0.26
NOD1-201ENST00000222823 INO80Q9ULG1 1556 aaPredicted RBP13.43□□□□□ -0.26
NOD1-201ENST00000222823 ARHGAP31Q2M1Z3 1444 aa13.43□□□□□ -0.26
NOD1-201ENST00000222823 POLR3DP05423 398 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms