RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
PKR1	YMR123W	LAM1	P38851	1228 aa		4.04	□□□□□ -1.76
PKR1	YMR123W	CWC24	P53769	259 aa		4.04	□□□□□ -1.76
PKR1	YMR123W	YOR352W	Q08816	343 aa		4.04	□□□□□ -1.76
PKR1	YMR123W	FAL1	Q12099	399 aa	Known RBP	4.04	□□□□□ -1.76
PKR1	YMR123W	ABD1	P32783	436 aa	Predicted RBP	4.03	□□□□□ -1.76
PKR1	YMR123W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
PKR1	YMR123W	GCN5	Q03330	439 aa		4.03	□□□□□ -1.76
PKR1	YMR123W	ESC2	Q06340	456 aa		4.03	□□□□□ -1.76
PKR1	YMR123W	YLL058W	Q12198	575 aa		4.03	□□□□□ -1.76
PKR1	YMR123W	GAL10	P04397	699 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	CMP2	P14747	604 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	SRM1	P21827	482 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	APL1	P27351	700 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	MEF2	P39677	819 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	MSC2	Q03455	724 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	ESC8	Q08119	714 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	OPI10	Q08202	246 aa		4.02	□□□□□ -1.77
PKR1	YMR123W	YCR015C	P25616	317 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	TOD6	P34219	525 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	FLR1	P38124	548 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	HFM1	P51979	1187 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	PLB2	Q03674	706 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	SHE9	Q04172	456 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	HRQ1	Q05549	1077 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	DUS4	Q06063	367 aa		4.01	□□□□□ -1.77
PKR1	YMR123W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
PKR1	YMR123W	DOM34	P33309	386 aa		4	□□□□□ -1.77
PKR1	YMR123W	YKL151C	P36059	337 aa		4	□□□□□ -1.77
PKR1	YMR123W	SPT20	P50875	604 aa		4	□□□□□ -1.77
PKR1	YMR123W	MTC3	P53077	123 aa		4	□□□□□ -1.77
PKR1	YMR123W	ALD6	P54115	500 aa	Known RBP	4	□□□□□ -1.77
PKR1	YMR123W	ROT1	Q03691	256 aa		4	□□□□□ -1.77
PKR1	YMR123W	YLR358C	O13565	187 aa		3.99	□□□□□ -1.77
PKR1	YMR123W	YKL069W	P36088	180 aa		3.99	□□□□□ -1.77
PKR1	YMR123W	VAC8	P39968	578 aa		3.99	□□□□□ -1.77
PKR1	YMR123W	PBP1	P53297	722 aa	Known RBP	3.99	□□□□□ -1.77
PKR1	YMR123W	MDM38	Q08179	573 aa		3.99	□□□□□ -1.77
PKR1	YMR123W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
PKR1	YMR123W	CDC6	P09119	513 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	CDC12	P32468	407 aa	Known RBP	3.98	□□□□□ -1.77
PKR1	YMR123W	MRP8	P35719	219 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	VBA5	P36172	582 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	MBP1	P39678	833 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	GIP4	P39732	760 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	TAF1	P46677	1066 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	CLU1	Q03690	1277 aa	Known RBP	3.98	□□□□□ -1.77
PKR1	YMR123W	RXT3	Q07458	294 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	XYL2	Q07993	356 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	GPB1	Q08886	897 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	OSW2	Q12202	724 aa		3.98	□□□□□ -1.77
PKR1	YMR123W	PRI2	P20457	528 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	CDC20	P26309	610 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	FUN30	P31380	1131 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	YKL222C	P35995	705 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	YAP1801	P38856	637 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	SPF1	P39986	1215 aa	Known RBP	3.97	□□□□□ -1.77
PKR1	YMR123W	MND2	P40577	368 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	3.97	□□□□□ -1.77	not detected
PKR1	YMR123W	VPS62	P53285	467 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	SRP1	Q02821	542 aa	Known RBP	3.97	□□□□□ -1.77
PKR1	YMR123W	SRT1	Q03175	343 aa		3.97	□□□□□ -1.77
PKR1	YMR123W	ACK1	Q07622	623 aa	Predicted RBP	3.97	□□□□□ -1.77
PKR1	YMR123W	PBY1	P38254	753 aa		3.96	□□□□□ -1.78
PKR1	YMR123W	GIC1	P38785	314 aa		3.96	□□□□□ -1.78
PKR1	YMR123W	HMI1	Q12039	706 aa		3.96	□□□□□ -1.78
PKR1	YMR123W	TAT2	P38967	592 aa		3.95	□□□□□ -1.78
PKR1	YMR123W	SAH1	P39954	449 aa	Known RBP	3.95	□□□□□ -1.78
PKR1	YMR123W	ZRG8	P40021	1076 aa		3.95	□□□□□ -1.78
PKR1	YMR123W	IRR1	P40541	1150 aa		3.95	□□□□□ -1.78
PKR1	YMR123W	RPP2A	P05319	106 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	STE11	P23561	717 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	CTS1	P29029	562 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	RPC82	P32349	654 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	ECM21	P38167	1117 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	GYP7	P48365	746 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	GTF1	P53260	183 aa	Predicted RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	NOP7	P53261	605 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	YAP6	Q03935	383 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	DUS3	Q06053	668 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	TDA5	Q06417	326 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	CDA1	Q06702	301 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	ADY3	Q07732	790 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	TPO1	Q07824	586 aa		3.94	□□□□□ -1.78
PKR1	YMR123W	NOP12	Q08208	459 aa	Known RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	SSF2	Q12153	453 aa	Predicted RBP	3.94	□□□□□ -1.78
PKR1	YMR123W	EMC1	P25574	760 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	STE5	P32917	917 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	YKR078W	P36158	585 aa	Known RBP	3.93	□□□□□ -1.78
PKR1	YMR123W	POA1	P38218	177 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	NPP2	P39997	493 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	MET12	P46151	657 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	YGR012W	P53206	393 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	YDR306C	Q06640	478 aa		3.93	□□□□□ -1.78
PKR1	YMR123W	HIS5	P07172	385 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	HSF1	P10961	833 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	ENA1	P13587	1091 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	PRP9	P19736	530 aa	Known RBP	3.92	□□□□□ -1.78
PKR1	YMR123W	LST4	P34239	828 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	YBR238C	P38330	731 aa	Known RBP	3.92	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 79 ms