RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W HUL5P53119 910 aa5.03□□□□□ -1.6
SSH4YKL124W MSC2Q03455 724 aa5.03□□□□□ -1.6
SSH4YKL124W YPR148CQ06523 435 aa5.03□□□□□ -1.6
SSH4YKL124W WHI4Q07655 649 aaKnown RBP5.03□□□□□ -1.6
SSH4YKL124W CEX1Q12453 761 aa5.03□□□□□ -1.6
SSH4YKL124W YDR524C-BQ3E6R4 66 aa5.03□□□□□ -1.6
SSH4YKL124W MAS2P11914 482 aa5.02□□□□□ -1.61
SSH4YKL124W CBP3P21560 335 aa5.02□□□□□ -1.61
SSH4YKL124W SWI4P25302 1093 aaKnown RBP5.02□□□□□ -1.61
SSH4YKL124W TVP38P36164 337 aa5.02□□□□□ -1.61
SSH4YKL124W DSF2P38213 736 aa5.02□□□□□ -1.61
SSH4YKL124W PCI8P40512 444 aa5.02□□□□□ -1.61
SSH4YKL124W CTR1P49573 406 aa5.02□□□□□ -1.61
SSH4YKL124W UBP15P50101 1230 aa5.02□□□□□ -1.61
SSH4YKL124W NAF1P53919 492 aaKnown RBP5.02□□□□□ -1.61
SSH4YKL124W YDR344CQ05510 147 aa5.02□□□□□ -1.61
SSH4YKL124W PHM6Q05637 104 aa5.02□□□□□ -1.61
SSH4YKL124W RGA2Q06407 1009 aa5.02□□□□□ -1.61
SSH4YKL124W YDL121CQ07541 149 aa5.02□□□□□ -1.61
SSH4YKL124W YLL058WQ12198 575 aa5.02□□□□□ -1.61
SSH4YKL124W ARP6Q12509 438 aa5.02□□□□□ -1.61
SSH4YKL124W PGK1P00560 416 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W RNR2P09938 399 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W KIN82P25341 720 aa5.01□□□□□ -1.61
SSH4YKL124W POT1P27796 417 aaKnown RBP RIP-Chip data5.01□□□□□ -1.61not detected
SSH4YKL124W HEM3P28789 327 aa5.01□□□□□ -1.61
SSH4YKL124W DUR3P33413 735 aa5.01□□□□□ -1.61
SSH4YKL124W POA1P38218 177 aa5.01□□□□□ -1.61
SSH4YKL124W VID28P40547 921 aa5.01□□□□□ -1.61
SSH4YKL124W VPS70P47161 811 aa5.01□□□□□ -1.61
SSH4YKL124W RPS7BP48164 190 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W FOL2P51601 243 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W MDR1P53258 950 aa5.01□□□□□ -1.61
SSH4YKL124W RET3P53600 189 aa5.01□□□□□ -1.61
SSH4YKL124W CNM67P53865 581 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W BNI5P53890 448 aaKnown RBP5.01□□□□□ -1.61
SSH4YKL124W ORC4P54791 529 aa5.01□□□□□ -1.61
SSH4YKL124W YLR407WQ06070 228 aa5.01□□□□□ -1.61
SSH4YKL124W AHC1Q12433 566 aa5.01□□□□□ -1.61
SSH4YKL124W ATG11Q12527 1178 aa5.01□□□□□ -1.61
SSH4YKL124W YDR461C-AQ2V2P7 80 aa5.01□□□□□ -1.61
SSH4YKL124W STI1P15705 589 aaKnown RBP RIP-Chip data5□□□□□ -1.61not detected
SSH4YKL124W YHL017WP38745 532 aa5□□□□□ -1.61
SSH4YKL124W ARP5P53946 755 aa5□□□□□ -1.61
SSH4YKL124W PSK2Q08217 1101 aa5□□□□□ -1.61
SSH4YKL124W RIF1P29539 1916 aa5□□□□□ -1.61
SSH4YKL124W VMA4P22203 233 aaKnown RBP5□□□□□ -1.61
SSH4YKL124W BCK2P33306 851 aa5□□□□□ -1.61
SSH4YKL124W UBP11P36026 717 aa5□□□□□ -1.61
SSH4YKL124W RPN10P38886 268 aaKnown RBP5□□□□□ -1.61
SSH4YKL124W YEL025CP39991 1188 aa5□□□□□ -1.61
SSH4YKL124W ALD5P40047 520 aaKnown RBP5□□□□□ -1.61
SSH4YKL124W EPL1P43572 832 aa5□□□□□ -1.61
SSH4YKL124W AZR1P50080 613 aa5□□□□□ -1.61
SSH4YKL124W ZPR1P53303 486 aaKnown RBP5□□□□□ -1.61
SSH4YKL124W CUS1Q02554 436 aaPredicted RBP5□□□□□ -1.61
SSH4YKL124W MFM1Q02783 413 aa5□□□□□ -1.61
SSH4YKL124W OXR1Q08952 273 aa5□□□□□ -1.61
SSH4YKL124W PGM1P33401 570 aaKnown RBP4.99□□□□□ -1.61
SSH4YKL124W GPD2P41911 440 aaKnown RBP4.99□□□□□ -1.61
SSH4YKL124W RNH70P53331 553 aa4.99□□□□□ -1.61
SSH4YKL124W CSM3Q04659 317 aa4.99□□□□□ -1.61
SSH4YKL124W SMD2Q06217 110 aaKnown RBP4.99□□□□□ -1.61
SSH4YKL124W THR4P16120 514 aaKnown RBP4.98□□□□□ -1.61
SSH4YKL124W HCA4P20448 770 aaKnown RBP4.98□□□□□ -1.61
SSH4YKL124W ESS1P22696 170 aa4.98□□□□□ -1.61
SSH4YKL124W TSR4P25040 408 aa4.98□□□□□ -1.61
SSH4YKL124W FUB1P25659 250 aa4.98□□□□□ -1.61
SSH4YKL124W SUV3P32580 737 aa4.98□□□□□ -1.61
SSH4YKL124W GAA1P39012 614 aa4.98□□□□□ -1.61
SSH4YKL124W RSC8P43609 557 aaKnown RBP4.98□□□□□ -1.61
SSH4YKL124W CIT3P43635 486 aa4.98□□□□□ -1.61
SSH4YKL124W SGM1P47166 707 aa4.98□□□□□ -1.61
SSH4YKL124W PSP2P50109 593 aaKnown RBP4.98□□□□□ -1.61
SSH4YKL124W YGR035CP53222 116 aa4.98□□□□□ -1.61
SSH4YKL124W DSE4P53753 1117 aa4.98□□□□□ -1.61
SSH4YKL124W GIS4Q04233 774 aa4.98□□□□□ -1.61
SSH4YKL124W AIM33Q04516 312 aa4.98□□□□□ -1.61
SSH4YKL124W CRD1Q07560 283 aa4.98□□□□□ -1.61
SSH4YKL124W TIP41Q12199 356 aa4.98□□□□□ -1.61
SSH4YKL124W UBR2Q07963 1872 aa4.98□□□□□ -1.61
SSH4YKL124W SMY2P32909 740 aaKnown RBP4.97□□□□□ -1.61
SSH4YKL124W ERP2P39704 215 aa4.97□□□□□ -1.61
SSH4YKL124W JHD1P40034 492 aa4.97□□□□□ -1.61
SSH4YKL124W ATG32P40458 529 aa4.97□□□□□ -1.61
SSH4YKL124W BUD6P41697 788 aa4.97□□□□□ -1.61
SSH4YKL124W ARH1P48360 493 aa4.97□□□□□ -1.61
SSH4YKL124W GPI13Q07830 1017 aa4.97□□□□□ -1.61
SSH4YKL124W ILV1P00927 576 aaKnown RBP4.97□□□□□ -1.61
SSH4YKL124W HIP1P06775 603 aa4.97□□□□□ -1.61
SSH4YKL124W CDC6P09119 513 aa4.97□□□□□ -1.61
SSH4YKL124W SWI6P09959 803 aa4.97□□□□□ -1.61
SSH4YKL124W UBC1P21734 215 aaKnown RBP4.97□□□□□ -1.61
SSH4YKL124W PRP22P24384 1145 aaKnown RBP4.97□□□□□ -1.61
SSH4YKL124W MSS51P32335 436 aa4.97□□□□□ -1.61
SSH4YKL124W IRE1P32361 1115 aa4.97□□□□□ -1.61
SSH4YKL124W BUD2P33314 1104 aa4.97□□□□□ -1.61
SSH4YKL124W TTI1P36097 1038 aa4.97□□□□□ -1.61
SSH4YKL124W TVP23P38962 199 aa4.97□□□□□ -1.61
SSH4YKL124W HOS4P40480 1083 aa4.97□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms