RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C TPO2P53283 614 aa5.21□□□□□ -1.58
RUB1YDR139C BI4P03879 638 aa5.2□□□□□ -1.58
RUB1YDR139C RFC5P38251 354 aa5.2□□□□□ -1.58
RUB1YDR139C GUS1P46655 708 aaKnown RBP RIP-Chip data5.2□□□□□ -1.58not detected
RUB1YDR139C TIM54P47045 478 aa5.2□□□□□ -1.58
RUB1YDR139C SRP1Q02821 542 aaKnown RBP5.2□□□□□ -1.58
RUB1YDR139C DUS3Q06053 668 aaKnown RBP5.2□□□□□ -1.58
RUB1YDR139C FMP25Q08023 583 aa5.2□□□□□ -1.58
RUB1YDR139C YLL058WQ12198 575 aa5.2□□□□□ -1.58
RUB1YDR139C OSH2Q12451 1283 aa5.2□□□□□ -1.58
RUB1YDR139C YOL098CQ12496 1037 aa5.2□□□□□ -1.58
RUB1YDR139C DFG16Q99234 619 aa5.2□□□□□ -1.58
RUB1YDR139C STI1P15705 589 aaKnown RBP RIP-Chip data5.19□□□□□ -1.58not detected
RUB1YDR139C RPL8BP29453 256 aaKnown RBP5.19□□□□□ -1.58
RUB1YDR139C SCT1P32784 759 aa5.19□□□□□ -1.58
RUB1YDR139C SEG2P34250 1132 aa5.19□□□□□ -1.58
RUB1YDR139C SAH1P39954 449 aaKnown RBP5.19□□□□□ -1.58
RUB1YDR139C PFD1P46988 109 aa5.19□□□□□ -1.58
RUB1YDR139C ECL1P48235 211 aa5.19□□□□□ -1.58
RUB1YDR139C ERP6P53198 216 aa5.19□□□□□ -1.58
RUB1YDR139C NSE3Q05541 303 aa5.19□□□□□ -1.58
RUB1YDR139C HRQ1Q05549 1077 aa5.19□□□□□ -1.58
RUB1YDR139C YDR306CQ06640 478 aa5.19□□□□□ -1.58
RUB1YDR139C KIN2P13186 1147 aaKnown RBP5.18□□□□□ -1.58
RUB1YDR139C ACE2P21192 770 aa5.18□□□□□ -1.58
RUB1YDR139C UTP8P53276 713 aaKnown RBP5.18□□□□□ -1.58
RUB1YDR139C MAP1Q01662 387 aaKnown RBP RIP-Chip data5.18□□□□□ -1.58not detected
RUB1YDR139C RSM24Q03976 319 aa5.18□□□□□ -1.58
RUB1YDR139C BDF2Q07442 638 aa5.18□□□□□ -1.58
RUB1YDR139C PPH3P32345 308 aa5.17□□□□□ -1.58
RUB1YDR139C AAR2P32357 355 aaPredicted RBP5.17□□□□□ -1.58
RUB1YDR139C CDC12P32468 407 aaKnown RBP5.17□□□□□ -1.58
RUB1YDR139C ELM1P32801 640 aa5.17□□□□□ -1.58
RUB1YDR139C ETP1P38748 585 aaKnown RBP5.17□□□□□ -1.58
RUB1YDR139C ALR2P43553 858 aa5.17□□□□□ -1.58
RUB1YDR139C IOC3P43596 787 aa5.17□□□□□ -1.58
RUB1YDR139C HUL5P53119 910 aa5.17□□□□□ -1.58
RUB1YDR139C EAF1Q06337 982 aa5.17□□□□□ -1.58
RUB1YDR139C MDM38Q08179 573 aa5.17□□□□□ -1.58
RUB1YDR139C CDC53Q12018 815 aaKnown RBP5.17□□□□□ -1.58
RUB1YDR139C HSP60P19882 572 aaKnown RBP5.16□□□□□ -1.58
RUB1YDR139C ARE1P25628 610 aa5.16□□□□□ -1.58
RUB1YDR139C APL1P27351 700 aa5.16□□□□□ -1.58
RUB1YDR139C SRP40P32583 406 aaPredicted RBP5.16□□□□□ -1.58
RUB1YDR139C YKL151CP36059 337 aa5.16□□□□□ -1.58
RUB1YDR139C ABZ1P37254 787 aaPredicted RBP5.16□□□□□ -1.58
RUB1YDR139C UBP5P39944 805 aa5.16□□□□□ -1.58
RUB1YDR139C YGR125WP53273 1036 aa5.16□□□□□ -1.58
RUB1YDR139C CDC11P32458 415 aa5.15□□□□□ -1.59
RUB1YDR139C HFM1P51979 1187 aa5.15□□□□□ -1.59
RUB1YDR139C MTC3P53077 123 aa5.15□□□□□ -1.59
RUB1YDR139C SNO2P53823 222 aa5.15□□□□□ -1.59
RUB1YDR139C YOR352WQ08816 343 aa5.15□□□□□ -1.59
RUB1YDR139C YDL177CQ12257 170 aa5.15□□□□□ -1.59
RUB1YDR139C YOR131CQ12486 218 aa5.15□□□□□ -1.59
RUB1YDR139C CIT1P00890 479 aa5.14□□□□□ -1.59
RUB1YDR139C ADE8P04161 214 aa5.14□□□□□ -1.59
RUB1YDR139C FUN30P31380 1131 aa5.14□□□□□ -1.59
RUB1YDR139C HBS1P32769 611 aaKnown RBP5.14□□□□□ -1.59
RUB1YDR139C YHR020WP38708 688 aaKnown RBP5.14□□□□□ -1.59
RUB1YDR139C CCC2P38995 1004 aa5.14□□□□□ -1.59
RUB1YDR139C SIT1P39980 628 aa5.14□□□□□ -1.59
RUB1YDR139C SRT1Q03175 343 aa5.14□□□□□ -1.59
RUB1YDR139C SIZ1Q04195 904 aa5.14□□□□□ -1.59
RUB1YDR139C UBX5Q06682 500 aa5.14□□□□□ -1.59
RUB1YDR139C FLC1Q08967 793 aa5.14□□□□□ -1.59
RUB1YDR139C OSW2Q12202 724 aa5.14□□□□□ -1.59
RUB1YDR139C YTA7P40340 1379 aa5.14□□□□□ -1.59
RUB1YDR139C CYC1P00044 109 aaPredicted RBP5.13□□□□□ -1.59
RUB1YDR139C CMP2P14747 604 aa5.13□□□□□ -1.59
RUB1YDR139C YKL091CP33324 310 aaKnown RBP5.13□□□□□ -1.59
RUB1YDR139C GIC1P38785 314 aa5.13□□□□□ -1.59
RUB1YDR139C GGA2P38817 585 aaKnown RBP5.13□□□□□ -1.59
RUB1YDR139C HUL4P40985 892 aa5.13□□□□□ -1.59
RUB1YDR139C MRPL22P53881 309 aa5.13□□□□□ -1.59
RUB1YDR139C RIB2Q12362 591 aaKnown RBP5.13□□□□□ -1.59
RUB1YDR139C YRO2P38079 344 aa5.12□□□□□ -1.59
RUB1YDR139C YAP1801P38856 637 aa5.12□□□□□ -1.59
RUB1YDR139C GYP7P48365 746 aa5.12□□□□□ -1.59
RUB1YDR139C MSC2Q03455 724 aa5.12□□□□□ -1.59
RUB1YDR139C YDL124WQ07551 312 aaKnown RBP5.12□□□□□ -1.59
RUB1YDR139C GAL11P19659 1081 aa5.11□□□□□ -1.59
RUB1YDR139C RPC82P32349 654 aa5.11□□□□□ -1.59
RUB1YDR139C YKR078WP36158 585 aaKnown RBP5.11□□□□□ -1.59
RUB1YDR139C RSP5P39940 809 aaKnown RBP5.11□□□□□ -1.59
RUB1YDR139C YER158CP40095 573 aa5.11□□□□□ -1.59
RUB1YDR139C PRP43P53131 767 aaKnown RBP5.11□□□□□ -1.59
RUB1YDR139C RPN4Q03465 531 aa5.11□□□□□ -1.59
RUB1YDR139C SGD1Q06132 899 aa5.11□□□□□ -1.59
RUB1YDR139C XYL2Q07993 356 aa5.11□□□□□ -1.59
RUB1YDR139C GAL10P04397 699 aa5.1□□□□□ -1.59
RUB1YDR139C GAS1P22146 559 aaKnown RBP5.1□□□□□ -1.59
RUB1YDR139C NIT1P40447 199 aa5.1□□□□□ -1.59
RUB1YDR139C TAF1P46677 1066 aa5.1□□□□□ -1.59
RUB1YDR139C NPL3Q01560 414 aaKnown RBP RIP-Chip data5.1□□□□□ -1.59 RIP-Chip
RUB1YDR139C TAF8Q03750 510 aa5.1□□□□□ -1.59
RUB1YDR139C LCD1Q04377 747 aa5.1□□□□□ -1.59
RUB1YDR139C FPR4Q06205 392 aaPredicted RBP5.1□□□□□ -1.59
RUB1YDR139C VTS1Q08831 523 aaKnown RBP RIP-Chip data5.1□□□□□ -1.59not detected
RUB1YDR139C HBN1Q96VH4 193 aa5.1□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 73.3 ms