RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	ACE2	P21192	770 aa		4.69	□□□□□ -1.66
ASM4	YDL088C	DBP2	P24783	546 aa	Known RBP	4.69	□□□□□ -1.66
ASM4	YDL088C	SPO20	Q04359	397 aa		4.69	□□□□□ -1.66
ASM4	YDL088C	DOM34	P33309	386 aa		4.68	□□□□□ -1.66
ASM4	YDL088C	YKL107W	P34251	309 aa		4.68	□□□□□ -1.66
ASM4	YDL088C	MNR2	P35724	969 aa		4.68	□□□□□ -1.66
ASM4	YDL088C	RRT14	P40470	206 aa		4.68	□□□□□ -1.66
ASM4	YDL088C	RKM4	Q12504	494 aa		4.68	□□□□□ -1.66
ASM4	YDL088C	TUB2	P02557	457 aa	Known RBP	4.67	□□□□□ -1.66
ASM4	YDL088C	CDC20	P26309	610 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	DUT1	P33317	147 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	PNT1	P38969	423 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	YGL176C	P46945	554 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	EEB1	Q02891	456 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	SIZ1	Q04195	904 aa		4.67	□□□□□ -1.66
ASM4	YDL088C	GSF2	Q04697	403 aa	Known RBP	4.67	□□□□□ -1.66
ASM4	YDL088C	SLA2	P33338	968 aa		4.66	□□□□□ -1.66
ASM4	YDL088C	SNF7	P39929	240 aa	Known RBP	4.66	□□□□□ -1.66
ASM4	YDL088C	GCV2	P49095	1034 aa		4.66	□□□□□ -1.66
ASM4	YDL088C	MCM6	P53091	1017 aa	Known RBP	4.66	□□□□□ -1.66
ASM4	YDL088C	MSC2	Q03455	724 aa		4.66	□□□□□ -1.66
ASM4	YDL088C	TMA10	Q06177	86 aa		4.66	□□□□□ -1.66
ASM4	YDL088C	ENA1	P13587	1091 aa		4.65	□□□□□ -1.66
ASM4	YDL088C	MET10	P39692	1035 aa		4.65	□□□□□ -1.66
ASM4	YDL088C	HFM1	P51979	1187 aa		4.65	□□□□□ -1.66
ASM4	YDL088C	ENA2	Q01896	1091 aa		4.65	□□□□□ -1.66
ASM4	YDL088C	YLR225C	Q05948	407 aa	Known RBP	4.65	□□□□□ -1.66
ASM4	YDL088C	ENA5	Q12691	1091 aa		4.65	□□□□□ -1.66
ASM4	YDL088C	EMC1	P25574	760 aa		4.65	□□□□□ -1.67
ASM4	YDL088C	YAP6	Q03935	383 aa		4.65	□□□□□ -1.67
ASM4	YDL088C	YPL066W	Q12194	479 aa		4.65	□□□□□ -1.67
ASM4	YDL088C	OSW2	Q12202	724 aa		4.65	□□□□□ -1.67
ASM4	YDL088C	ZRG8	P40021	1076 aa		4.64	□□□□□ -1.67
ASM4	YDL088C	MNN10	P50108	393 aa	Known RBP	4.64	□□□□□ -1.67
ASM4	YDL088C	HCM1	P25364	564 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	LST4	P34239	828 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	POA1	P38218	177 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	KRI1	P42846	591 aa	Known RBP	4.63	□□□□□ -1.67
ASM4	YDL088C	VPS62	P53285	467 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	CWC24	P53769	259 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	GDE1	Q02979	1223 aa		4.63	□□□□□ -1.67
ASM4	YDL088C	CDC6	P09119	513 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	TRM2	P33753	639 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	MND2	P40577	368 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	MAD1	P40957	749 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	YLR224W	Q05947	369 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	HMI1	Q12039	706 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	PNS1	Q12412	539 aa		4.62	□□□□□ -1.67
ASM4	YDL088C	CLN2	P20438	545 aa		4.61	□□□□□ -1.67
ASM4	YDL088C	STE11	P23561	717 aa		4.61	□□□□□ -1.67
ASM4	YDL088C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
ASM4	YDL088C	FAA4	P47912	694 aa	Known RBP	4.61	□□□□□ -1.67
ASM4	YDL088C	TPO1	Q07824	586 aa		4.61	□□□□□ -1.67
ASM4	YDL088C	SAH1	P39954	449 aa	Known RBP	4.61	□□□□□ -1.67
ASM4	YDL088C	SIP5	P40210	489 aa	Known RBP	4.61	□□□□□ -1.67
ASM4	YDL088C	XYL2	Q07993	356 aa		4.61	□□□□□ -1.67
ASM4	YDL088C	NOP12	Q08208	459 aa	Known RBP	4.61	□□□□□ -1.67
ASM4	YDL088C	FAL1	Q12099	399 aa	Known RBP	4.61	□□□□□ -1.67
ASM4	YDL088C	NAP1	P25293	417 aa	Known RBP	4.6	□□□□□ -1.67
ASM4	YDL088C	ABD1	P32783	436 aa	Predicted RBP	4.6	□□□□□ -1.67
ASM4	YDL088C	YGR053C	P53234	283 aa		4.6	□□□□□ -1.67
ASM4	YDL088C	ESC2	Q06340	456 aa		4.6	□□□□□ -1.67
ASM4	YDL088C	RPP2A	P05319	106 aa	Known RBP	4.59	□□□□□ -1.67
ASM4	YDL088C	YAP1801	P38856	637 aa		4.59	□□□□□ -1.67
ASM4	YDL088C	PLB1	P39105	664 aa		4.59	□□□□□ -1.67
ASM4	YDL088C	MTC3	P53077	123 aa		4.59	□□□□□ -1.67
ASM4	YDL088C	HRQ1	Q05549	1077 aa		4.59	□□□□□ -1.67
ASM4	YDL088C	MDM38	Q08179	573 aa		4.59	□□□□□ -1.67
ASM4	YDL088C	JIP5	Q06214	492 aa	Predicted RBP	4.58	□□□□□ -1.68
ASM4	YDL088C	SRP101	P32916	621 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	MET12	P46151	657 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	MSE1	P48525	536 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	PSP2	P50109	593 aa	Known RBP	4.57	□□□□□ -1.68
ASM4	YDL088C	YGR012W	P53206	393 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	SRP1	Q02821	542 aa	Known RBP	4.57	□□□□□ -1.68
ASM4	YDL088C	URN1	Q06525	465 aa	Known RBP	4.57	□□□□□ -1.68
ASM4	YDL088C	YLL058W	Q12198	575 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	HIS5	P07172	385 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	YKL151C	P36059	337 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	CCC2	P38995	1004 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	PHO23	P50947	330 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	PUS9	Q12069	462 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	NTO1	Q12311	748 aa		4.57	□□□□□ -1.68
ASM4	YDL088C	SBA1	P28707	216 aa	Known RBP	4.56	□□□□□ -1.68
ASM4	YDL088C	FUN30	P31380	1131 aa		4.56	□□□□□ -1.68
ASM4	YDL088C	MBP1	P39678	833 aa		4.56	□□□□□ -1.68
ASM4	YDL088C	SRT1	Q03175	343 aa		4.56	□□□□□ -1.68
ASM4	YDL088C	ADY3	Q07732	790 aa		4.56	□□□□□ -1.68
ASM4	YDL088C	HSF1	P10961	833 aa		4.55	□□□□□ -1.68
ASM4	YDL088C	ECM21	P38167	1117 aa	Known RBP	4.55	□□□□□ -1.68
ASM4	YDL088C	GIC1	P38785	314 aa		4.55	□□□□□ -1.68
ASM4	YDL088C	IOC3	P43596	787 aa		4.55	□□□□□ -1.68
ASM4	YDL088C	DUS3	Q06053	668 aa	Known RBP	4.55	□□□□□ -1.68
ASM4	YDL088C	YPR196W	Q06595	470 aa		4.55	□□□□□ -1.68
ASM4	YDL088C	SPE1	P08432	466 aa		4.54	□□□□□ -1.68
ASM4	YDL088C	PRI2	P20457	528 aa		4.54	□□□□□ -1.68
ASM4	YDL088C	AGP1	P25376	633 aa		4.54	□□□□□ -1.68
ASM4	YDL088C	PMI40	P29952	429 aa	Known RBP	4.54	□□□□□ -1.68
ASM4	YDL088C	AIM21	P40563	679 aa		4.54	□□□□□ -1.68
ASM4	YDL088C	SUN4	P53616	420 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms