RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 DCTN1Q14203 1278 aa18.35■□□□□ 0.53
SCAF1-203ENST00000598359 ZNF790Q6PG37 636 aa18.35■□□□□ 0.53
SCAF1-203ENST00000598359 CANXP27824 592 aaKnown RBP18.34■□□□□ 0.53
SCAF1-203ENST00000598359 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
SCAF1-203ENST00000598359 USPL1Q5W0Q7 1092 aa18.33■□□□□ 0.52
SCAF1-203ENST00000598359 PARP3Q9Y6F1 533 aa18.33■□□□□ 0.52
SCAF1-203ENST00000598359 COL15A1P39059 1388 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 HEG1Q9ULI3 1381 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 BTBD11A6QL63 1104 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 DDR1Q08345 913 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 RTF1Q92541 710 aaKnown RBP18.32■□□□□ 0.52
SCAF1-203ENST00000598359 PXDNLA1KZ92 1463 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 C10orf71Q711Q0 1435 aa18.32■□□□□ 0.52
SCAF1-203ENST00000598359 A0A0G2JLW4 131 aa18.31■□□□□ 0.52
SCAF1-203ENST00000598359 ZPR1O75312 459 aa18.31■□□□□ 0.52
SCAF1-203ENST00000598359 ZNF526Q8TF50 670 aaPredicted RBP18.31■□□□□ 0.52
SCAF1-203ENST00000598359 KIAA1551Q9HCM1 1747 aa18.3■□□□□ 0.52
SCAF1-203ENST00000598359 N4BP2Q86UW6 1770 aaPredicted RBP18.3■□□□□ 0.52
SCAF1-203ENST00000598359 KIF13BQ9NQT8 1826 aa18.29■□□□□ 0.52
SCAF1-203ENST00000598359 STARD3NLO95772 234 aa18.29■□□□□ 0.52
SCAF1-203ENST00000598359 FMNL2Q96PY5 1086 aa18.29■□□□□ 0.52
SCAF1-203ENST00000598359 PRAMEF22A3QJZ6 481 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 A1BGP04217 495 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 DPEP1P16444 411 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 PLEKHF1Q96S99 279 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 BCL2L12Q9HB09 334 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 NARFQ9UHQ1 456 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 ZNF330Q9Y3S2 320 aaPredicted RBP18.28■□□□□ 0.52
SCAF1-203ENST00000598359 ADCY9O60503 1353 aa18.28■□□□□ 0.52
SCAF1-203ENST00000598359 POLRMTO00411 1230 aaKnown RBP18.27■□□□□ 0.52
SCAF1-203ENST00000598359 TM4SF1P30408 202 aa18.27■□□□□ 0.52
SCAF1-203ENST00000598359 PIP4K2AP48426 406 aaPredicted RBP18.27■□□□□ 0.52
SCAF1-203ENST00000598359 MIS18AQ9NYP9 233 aa18.27■□□□□ 0.52
SCAF1-203ENST00000598359 EIF5P55010 431 aaKnown RBP18.26■□□□□ 0.51
SCAF1-203ENST00000598359 TGFB2P61812 414 aa18.26■□□□□ 0.51
SCAF1-203ENST00000598359 NFIXQ14938 502 aa18.26■□□□□ 0.51
SCAF1-203ENST00000598359 RALBP1Q15311 655 aa18.26■□□□□ 0.51
SCAF1-203ENST00000598359 THUMPD2Q9BTF0 503 aaKnown RBP18.26■□□□□ 0.51
SCAF1-203ENST00000598359 HTATSF1O43719 755 aaKnown RBP18.25■□□□□ 0.51
SCAF1-203ENST00000598359 TEX13AQ9BXU3 409 aaPredicted RBP18.25■□□□□ 0.51
SCAF1-203ENST00000598359 BCS1LQ9Y276 419 aa18.25■□□□□ 0.51
SCAF1-203ENST00000598359 USP16Q9Y5T5 823 aa18.25■□□□□ 0.51
SCAF1-203ENST00000598359 NEFMP07197 916 aa18.24■□□□□ 0.51
SCAF1-203ENST00000598359 NFE2L2Q16236 605 aa18.24■□□□□ 0.51
SCAF1-203ENST00000598359 BICDL1Q6ZP65 573 aa18.24■□□□□ 0.51
SCAF1-203ENST00000598359 TBC1D2BQ9UPU7 963 aa18.24■□□□□ 0.51
SCAF1-203ENST00000598359 DLG5Q8TDM6 1919 aa18.23■□□□□ 0.51
SCAF1-203ENST00000598359 KCNA3P22001 575 aa18.23■□□□□ 0.51
SCAF1-203ENST00000598359 CHRNA5P30532 468 aa18.23■□□□□ 0.51
SCAF1-203ENST00000598359 MAPK8IP3Q9UPT6 1336 aa18.23■□□□□ 0.51
SCAF1-203ENST00000598359 TAF7Q15545 349 aaPredicted RBP18.22■□□□□ 0.51
SCAF1-203ENST00000598359 MYBBP1AQ9BQG0 1328 aaKnown RBP18.22■□□□□ 0.51
SCAF1-203ENST00000598359 A0A087WZG4 1122 aa18.21■□□□□ 0.51
SCAF1-203ENST00000598359 SERPINB2P05120 415 aa18.2■□□□□ 0.5
SCAF1-203ENST00000598359 SNRPA1P09661 255 aaKnown RBP18.2■□□□□ 0.5
SCAF1-203ENST00000598359 IL6STP40189 918 aaPredicted RBP18.2■□□□□ 0.5
SCAF1-203ENST00000598359 APLP1P51693 650 aa18.2■□□□□ 0.5
SCAF1-203ENST00000598359 TBC1D9BQ66K14 1250 aa18.2■□□□□ 0.5
SCAF1-203ENST00000598359 AFDNP55196 1824 aaKnown RBP18.2■□□□□ 0.5
SCAF1-203ENST00000598359 SCN7AQ01118 1682 aa18.19■□□□□ 0.5
SCAF1-203ENST00000598359 KIF3CO14782 793 aa18.19■□□□□ 0.5
SCAF1-203ENST00000598359 CARMIL3Q8ND23 1372 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 CAMTA2O94983 1202 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 ARHGAP27Q6ZUM4 889 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 CCDC146Q8IYE0 955 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 CCDC24Q8N4L8 307 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 DNAJC5GQ8N7S2 189 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 PNNQ9H307 717 aaKnown RBP18.18■□□□□ 0.5
SCAF1-203ENST00000598359 PIM2Q9P1W9 311 aa18.18■□□□□ 0.5
SCAF1-203ENST00000598359 BRCA1P38398 1863 aaKnown RBP18.18■□□□□ 0.5
SCAF1-203ENST00000598359 NBPF26B4DH59 902 aa18.17■□□□□ 0.5
SCAF1-203ENST00000598359 NBPF10Q6P3W6 841 aaKnown RBP18.17■□□□□ 0.5
SCAF1-203ENST00000598359 DZIP3Q86Y13 1208 aaKnown RBP18.17■□□□□ 0.5
SCAF1-203ENST00000598359 NBPF15Q8N660 670 aa18.17■□□□□ 0.5
SCAF1-203ENST00000598359 RRP7AQ9Y3A4 280 aaKnown RBP18.17■□□□□ 0.5
SCAF1-203ENST00000598359 NRXN2Q9P2S2 1712 aa18.17■□□□□ 0.5
SCAF1-203ENST00000598359 RIPK4P57078 832 aa18.16■□□□□ 0.5
SCAF1-203ENST00000598359 NPM2Q86SE8 214 aaKnown RBP18.16■□□□□ 0.5
SCAF1-203ENST00000598359 KDM3BQ7LBC6 1761 aa18.16■□□□□ 0.5
SCAF1-203ENST00000598359 DALRD3Q5D0E6 543 aaKnown RBP18.15■□□□□ 0.5
SCAF1-203ENST00000598359 PRKRIP1Q9H875 184 aaPredicted RBP18.15■□□□□ 0.5
SCAF1-203ENST00000598359 WDR90Q96KV7 1748 aa18.15■□□□□ 0.5
SCAF1-203ENST00000598359 PCNTO95613 3336 aa18.15■□□□□ 0.5
SCAF1-203ENST00000598359 EIF4A1P60842 406 aaKnown RBP18.14■□□□□ 0.49
SCAF1-203ENST00000598359 NEUROD2Q15784 382 aa18.14■□□□□ 0.49
SCAF1-203ENST00000598359 PNISRQ8TF01 805 aaKnown RBP18.14■□□□□ 0.49
SCAF1-203ENST00000598359 BCORQ6W2J9 1755 aa18.13■□□□□ 0.49
SCAF1-203ENST00000598359 TMPOP42166 694 aaKnown RBP18.13■□□□□ 0.49
SCAF1-203ENST00000598359 CAPN15O75808 1086 aa18.12■□□□□ 0.49
SCAF1-203ENST00000598359 WDR43Q15061 677 aaKnown RBP eCLIP18.12■□□□□ 0.49
SCAF1-203ENST00000598359 COL13A1Q5TAT6 717 aaPredicted RBP18.12■□□□□ 0.49
SCAF1-203ENST00000598359 PRR5LQ6MZQ0 368 aa18.12■□□□□ 0.49
SCAF1-203ENST00000598359 C2CD5Q86YS7 1000 aa18.12■□□□□ 0.49
SCAF1-203ENST00000598359 NGEFQ8N5V2 710 aa18.12■□□□□ 0.49
SCAF1-203ENST00000598359 ADAMTS8Q9UP79 889 aa18.12■□□□□ 0.49
SCAF1-203ENST00000598359 TOMM70O94826 608 aa18.11■□□□□ 0.49
SCAF1-203ENST00000598359 SETDB2Q96T68 719 aa18.11■□□□□ 0.49
SCAF1-203ENST00000598359 TSPYL4Q9UJ04 414 aa18.11■□□□□ 0.49
SCAF1-203ENST00000598359 LAMB4A4D0S4 1761 aa18.11■□□□□ 0.49
SCAF1-203ENST00000598359 ARFGEF1Q9Y6D6 1849 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms