RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 ERVV-2B6SEH9 535 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 KIF3CO14782 793 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 VAMP4O75379 141 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 PRELPP51888 382 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 RARSP54136 660 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 NFATC2IPQ8NCF5 419 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 ZNF428Q96B54 188 aa16.79■□□□□ 0.28
SHKBP1-209ENST00000595803 TSPYL6Q8N831 410 aa16.78■□□□□ 0.28
SHKBP1-209ENST00000595803 RNF123Q5XPI4 1314 aa16.77■□□□□ 0.28
SHKBP1-209ENST00000595803 BCAR3O75815 825 aa16.77■□□□□ 0.28
SHKBP1-209ENST00000595803 RRP1P56182 461 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-209ENST00000595803 KDM6AO15550 1401 aaPredicted RBP16.77■□□□□ 0.27
SHKBP1-209ENST00000595803 FKBP8Q14318 412 aa16.76■□□□□ 0.27
SHKBP1-209ENST00000595803 ALDH1L2Q3SY69 923 aa16.76■□□□□ 0.27
SHKBP1-209ENST00000595803 TNS4Q8IZW8 715 aa16.76■□□□□ 0.27
SHKBP1-209ENST00000595803 EIF4A1P60842 406 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-209ENST00000595803 SMC4Q9NTJ3 1288 aa16.75■□□□□ 0.27
SHKBP1-209ENST00000595803 TFCP2L1Q9NZI6 479 aa16.75■□□□□ 0.27
SHKBP1-209ENST00000595803 WDR90Q96KV7 1748 aa16.75■□□□□ 0.27
SHKBP1-209ENST00000595803 SCN11AQ9UI33 1791 aa16.74■□□□□ 0.27
SHKBP1-209ENST00000595803 KCNQ3O43525 872 aa16.74■□□□□ 0.27
SHKBP1-209ENST00000595803 CANXP27824 592 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-209ENST00000595803 KRT24Q2M2I5 525 aa16.74■□□□□ 0.27
SHKBP1-209ENST00000595803 SSH1Q8WYL5 1049 aa16.74■□□□□ 0.27
SHKBP1-209ENST00000595803 SOS1Q07889 1333 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 VIRMAQ69YN4 1812 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 ADAMTS7Q9UKP4 1686 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 PLIN1O60240 522 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 SLC34A2O95436 690 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 IRX6P78412 446 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 TTC5Q8N0Z6 440 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 FRAT1Q92837 279 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 BCL2L13Q9BXK5 485 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 CHMP4AQ9BY43 222 aa16.73■□□□□ 0.27
SHKBP1-209ENST00000595803 SLC39A6Q13433 755 aa16.72■□□□□ 0.27
SHKBP1-209ENST00000595803 SLC27A3Q5K4L6 730 aa16.72■□□□□ 0.27
SHKBP1-209ENST00000595803 ZNF790Q6PG37 636 aa16.72■□□□□ 0.27
SHKBP1-209ENST00000595803 TMOD3Q9NYL9 352 aa16.72■□□□□ 0.27
SHKBP1-209ENST00000595803 PCNTO95613 3336 aa16.72■□□□□ 0.27
SHKBP1-209ENST00000595803 TCERG1O14776 1098 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-209ENST00000595803 IPO8O15397 1037 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-209ENST00000595803 KCNQ4P56696 695 aa16.7■□□□□ 0.26
SHKBP1-209ENST00000595803 CCDC30Q5VVM6 783 aa16.7■□□□□ 0.26
SHKBP1-209ENST00000595803 MRPL50Q8N5N7 158 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-209ENST00000595803 HOXB7P09629 217 aa16.69■□□□□ 0.26
SHKBP1-209ENST00000595803 ZKSCAN2Q63HK3 967 aa16.69■□□□□ 0.26
SHKBP1-209ENST00000595803 MSL1Q68DK7 614 aa16.69■□□□□ 0.26
SHKBP1-209ENST00000595803 JMYQ8N9B5 988 aa16.69■□□□□ 0.26
SHKBP1-209ENST00000595803 NOB1Q9ULX3 412 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-209ENST00000595803 MS4A1P11836 297 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 EIF2S2P20042 333 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 PRIM1P49642 420 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 BRPF1P55201 1214 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 ERICH6BQ5W0A0 696 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 PIGBQ92521 554 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 SYTL4Q96C24 671 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 KLRG1Q96E93 195 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 FMNL2Q96PY5 1086 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 STK31Q9BXU1 1019 aa16.68■□□□□ 0.26
SHKBP1-209ENST00000595803 MRC1P22897 1456 aa16.67■□□□□ 0.26
SHKBP1-209ENST00000595803 SIPA1L3O60292 1781 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-209ENST00000595803 TOMM70O94826 608 aa16.67■□□□□ 0.26
SHKBP1-209ENST00000595803 CD2APQ9Y5K6 639 aa16.67■□□□□ 0.26
SHKBP1-209ENST00000595803 KDM3BQ7LBC6 1761 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 MSH5O43196 834 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 SNRPA1P09661 255 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 HTRA3P83110 453 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 PDE3AQ14432 1141 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 HDGFL1Q5TGJ6 251 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 NECTIN2Q92692 538 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 KIF16BQ96L93 1317 aa16.66■□□□□ 0.26
SHKBP1-209ENST00000595803 LY75O60449 1722 aa16.65■□□□□ 0.26
SHKBP1-209ENST00000595803 KAT6BQ8WYB5 2073 aa16.65■□□□□ 0.26
SHKBP1-209ENST00000595803 ZNF496Q96IT1 587 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-209ENST00000595803 WWC3Q9ULE0 1092 aa16.65■□□□□ 0.26
SHKBP1-209ENST00000595803 CICQ96RK0 1608 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-209ENST00000595803 COL23A1Q86Y22 540 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-209ENST00000595803 ARHGAP45Q92619 1136 aa16.64■□□□□ 0.25
SHKBP1-209ENST00000595803 ATG3Q9NT62 314 aa16.64■□□□□ 0.25
SHKBP1-209ENST00000595803 HEG1Q9ULI3 1381 aa16.64■□□□□ 0.25
SHKBP1-209ENST00000595803 C20orf194Q5TEA3 1177 aa16.63■□□□□ 0.25
SHKBP1-209ENST00000595803 ATF7IPQ6VMQ6 1270 aa16.63■□□□□ 0.25
SHKBP1-209ENST00000595803 DZIP1LQ8IYY4 767 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-209ENST00000595803 API5Q9BZZ5 524 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-209ENST00000595803 ASAP1Q9ULH1 1129 aa16.63■□□□□ 0.25
SHKBP1-209ENST00000595803 PTCD1O75127 700 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-209ENST00000595803 FTSJ3Q8IY81 847 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-209ENST00000595803 CRBNQ96SW2 442 aa16.62■□□□□ 0.25
SHKBP1-209ENST00000595803 PRAMEF22A3QJZ6 481 aa16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 EXOC6Q8TAG9 804 aa16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 CLUAP1Q96AJ1 413 aa16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 DBF4Q9UBU7 674 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 DOT1LQ8TEK3 1739 aa16.61■□□□□ 0.25
SHKBP1-209ENST00000595803 TOGARAM1Q9Y4F4 1720 aa16.6■□□□□ 0.25
SHKBP1-209ENST00000595803 PANK1Q8TE04 598 aa16.6■□□□□ 0.25
SHKBP1-209ENST00000595803 TEX13AQ9BXU3 409 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-209ENST00000595803 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
SHKBP1-209ENST00000595803 PTPRCP08575 1304 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms