RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MIS18AQ9NYP9 233 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 PLCH1Q4KWH8 1693 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 GSPT1P15170 499 aaKnown RBP16.29■□□□□ 0.2
VPS4A-204ENST00000566354 RABEP1Q15276 862 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 AKAP4Q5JQC9 854 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 LGR6Q9HBX8 967 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 MPRIPQ6WCQ1 1025 aa16.28■□□□□ 0.2
VPS4A-204ENST00000566354 LRRC37A3O60309 1634 aa16.28■□□□□ 0.2
VPS4A-204ENST00000566354 C1orf141Q5JVX7 400 aa16.28■□□□□ 0.2
VPS4A-204ENST00000566354 TTC22Q5TAA0 569 aa16.28■□□□□ 0.2
VPS4A-204ENST00000566354 FOXD4L1Q9NU39 408 aa16.28■□□□□ 0.2
VPS4A-204ENST00000566354 CHL1O00533 1208 aa16.27■□□□□ 0.2
VPS4A-204ENST00000566354 RPAP2Q8IXW5 612 aaPredicted RBP16.27■□□□□ 0.2
VPS4A-204ENST00000566354 RBM10P98175 930 aaKnown RBP16.27■□□□□ 0.19
VPS4A-204ENST00000566354 GAS2L3Q86XJ1 694 aa16.27■□□□□ 0.19
VPS4A-204ENST00000566354 ANKRD44Q8N8A2 993 aa16.27■□□□□ 0.19
VPS4A-204ENST00000566354 CEMIPQ8WUJ3 1361 aa16.26■□□□□ 0.19
VPS4A-204ENST00000566354 OVOS2A0A0G2JMS6 1433 aa16.26■□□□□ 0.19
VPS4A-204ENST00000566354 SSFA2P28290 1259 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 SPG7Q9UQ90 795 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 PKD1L3Q7Z443 1732 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 ESPNB1AK53 854 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 KRT24Q2M2I5 525 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 USP26Q9BXU7 913 aa16.25■□□□□ 0.19
VPS4A-204ENST00000566354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS4A-204ENST00000566354 PARP4Q9UKK3 1724 aaKnown RBP16.25■□□□□ 0.19
VPS4A-204ENST00000566354 CYP27B1O15528 508 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 IL2RBP14784 551 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 TRIM44Q96DX7 344 aaPredicted RBP16.24■□□□□ 0.19
VPS4A-204ENST00000566354 IBTKQ9P2D0 1353 aaPredicted RBP16.24■□□□□ 0.19
VPS4A-204ENST00000566354 PHKG2P15735 406 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 NUCB2P80303 420 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 KLHL40Q2TBA0 621 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 TSPYL4Q9UJ04 414 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 NRAPQ86VF7 1730 aa16.24■□□□□ 0.19
VPS4A-204ENST00000566354 RNMTO43148 476 aaKnown RBP16.23■□□□□ 0.19
VPS4A-204ENST00000566354 BAG4O95429 457 aaKnown RBP16.23■□□□□ 0.19
VPS4A-204ENST00000566354 CASC1Q6TDU7 716 aa16.23■□□□□ 0.19
VPS4A-204ENST00000566354 LRP6O75581 1613 aa16.23■□□□□ 0.19
VPS4A-204ENST00000566354 C8orf37Q96NL8 207 aa16.23■□□□□ 0.19
VPS4A-204ENST00000566354 ATP10DQ9P241 1426 aa16.23■□□□□ 0.19
VPS4A-204ENST00000566354 RRP9O43818 475 aaKnown RBP16.22■□□□□ 0.19
VPS4A-204ENST00000566354 SLIT2O94813 1529 aa16.22■□□□□ 0.19
VPS4A-204ENST00000566354 PTPRCP08575 1304 aa16.22■□□□□ 0.19
VPS4A-204ENST00000566354 TAF7Q15545 349 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-204ENST00000566354 CEP85Q6P2H3 762 aa16.22■□□□□ 0.19
VPS4A-204ENST00000566354 C16orf71Q8IYS4 520 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-204ENST00000566354 IFNL2Q8IZJ0 200 aa16.22■□□□□ 0.19
VPS4A-204ENST00000566354 ZCRB1Q8TBF4 217 aaKnown RBP16.22■□□□□ 0.19
VPS4A-204ENST00000566354 NAP1L5Q96NT1 182 aaPredicted RBP16.22■□□□□ 0.19
VPS4A-204ENST00000566354 RGS12O14924 1447 aa16.21■□□□□ 0.19
VPS4A-204ENST00000566354 KDM6AO15550 1401 aaPredicted RBP16.21■□□□□ 0.19
VPS4A-204ENST00000566354 PLEKHG2Q9H7P9 1386 aa16.21■□□□□ 0.19
VPS4A-204ENST00000566354 SPATA31A6Q5VVP1 1343 aa16.21■□□□□ 0.19
VPS4A-204ENST00000566354 KLHL34Q8N239 644 aa16.21■□□□□ 0.19
VPS4A-204ENST00000566354 CWC22Q9HCG8 908 aaKnown RBP16.21■□□□□ 0.19
VPS4A-204ENST00000566354 DDX49Q9Y6V7 483 aaKnown RBP16.21■□□□□ 0.19
VPS4A-204ENST00000566354 NWD2Q9ULI1 1742 aa16.21■□□□□ 0.18
VPS4A-204ENST00000566354 TEFQ10587 303 aa16.2■□□□□ 0.18
VPS4A-204ENST00000566354 NGLY1Q96IV0 654 aa16.2■□□□□ 0.18
VPS4A-204ENST00000566354 ADAMTS7Q9UKP4 1686 aa16.2■□□□□ 0.18
VPS4A-204ENST00000566354 SCN11AQ9UI33 1791 aa16.2■□□□□ 0.18
VPS4A-204ENST00000566354 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
VPS4A-204ENST00000566354 SDSP20132 328 aa16.19■□□□□ 0.18
VPS4A-204ENST00000566354 ST18O60284 1047 aa16.19■□□□□ 0.18
VPS4A-204ENST00000566354 CCDC173Q0VFZ6 552 aa16.19■□□□□ 0.18
VPS4A-204ENST00000566354 PCDH11XQ9BZA7 1347 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 PCDH11YQ9BZA8 1340 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 REC8O95072 547 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 CYP2E1P05181 493 aaPredicted RBP16.18■□□□□ 0.18
VPS4A-204ENST00000566354 DDX54Q8TDD1 881 aaKnown RBP16.18■□□□□ 0.18
VPS4A-204ENST00000566354 DISP2A7MBM2 1401 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 ERBB4Q15303 1308 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 SPATA31A1Q5TZJ5 1347 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 PPP1R9BQ96SB3 815 aa16.18■□□□□ 0.18
VPS4A-204ENST00000566354 KCNQ3O43525 872 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 NASPP49321 788 aaPredicted RBP16.17■□□□□ 0.18
VPS4A-204ENST00000566354 OTUD7AQ8TE49 926 aaPredicted RBP16.17■□□□□ 0.18
VPS4A-204ENST00000566354 ANP32BQ92688 251 aaKnown RBP16.17■□□□□ 0.18
VPS4A-204ENST00000566354 CCDC9Q9Y3X0 531 aaKnown RBP16.17■□□□□ 0.18
VPS4A-204ENST00000566354 SIPA1L3O60292 1781 aaPredicted RBP16.17■□□□□ 0.18
VPS4A-204ENST00000566354 BCL9LQ86UU0 1499 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 BTBD11A6QL63 1104 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 HMMRO75330 724 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 UNC5CLQ8IV45 518 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 DCAF5Q96JK2 942 aa16.17■□□□□ 0.18
VPS4A-204ENST00000566354 ZNF445P59923 1031 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 MEIS3Q99687 375 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 BABAM1Q9NWV8 329 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 KDM3BQ7LBC6 1761 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 SPATA31A5Q5VU36 1347 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 SPATA31A7Q8IWB4 1347 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 WNK3Q9BYP7 1800 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 PLCB2Q00722 1185 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 MCTP1Q6DN14 999 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 NFATC2IPQ8NCF5 419 aa16.16■□□□□ 0.18
VPS4A-204ENST00000566354 SMARCA5O60264 1052 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-204ENST00000566354 FNBP4Q8N3X1 1017 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-204ENST00000566354 SLC52A2Q9HAB3 445 aa16.15■□□□□ 0.18
VPS4A-204ENST00000566354 ERC2O15083 957 aa16.14■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms