RNA–Protein interactions for RNA: ENST00000559942.5

PPP1R3E-204, Transcript of protein phosphatase 1 regulatory subunit 3E, humanhuman

TSL 1 (best)

Gene PPP1R3E, Length 1,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3E-204ENST00000559942 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.24
PPP1R3E-204ENST00000559942 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.24
PPP1R3E-204ENST00000559942 POLRMTO00411 1230 aaKnown RBP13.57□□□□□ -0.24
PPP1R3E-204ENST00000559942 RPS6KA4O75676 772 aa13.57□□□□□ -0.24
PPP1R3E-204ENST00000559942 TAOK3Q9H2K8 898 aa13.57□□□□□ -0.24
PPP1R3E-204ENST00000559942 C21orf2O43822 256 aa13.56□□□□□ -0.24
PPP1R3E-204ENST00000559942 RC3H1Q5TC82 1133 aaKnown RBP13.56□□□□□ -0.24
PPP1R3E-204ENST00000559942 SAPCD2Q86UD0 394 aa13.56□□□□□ -0.24
PPP1R3E-204ENST00000559942 RAPGEF4Q8WZA2 1011 aa13.56□□□□□ -0.24
PPP1R3E-204ENST00000559942 USP31Q70CQ4 1352 aa13.56□□□□□ -0.24
PPP1R3E-204ENST00000559942 C2CD5Q86YS7 1000 aa13.55□□□□□ -0.24
PPP1R3E-204ENST00000559942 ASAP1Q9ULH1 1129 aa13.55□□□□□ -0.24
PPP1R3E-204ENST00000559942 LTBP3Q9NS15 1303 aa13.55□□□□□ -0.24
PPP1R3E-204ENST00000559942 COL6A3P12111 3177 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 H0YIN7 160 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 TATP17735 454 aaPredicted RBP13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 TM4SF1P30408 202 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 AKAP4Q5JQC9 854 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 HHIPL1Q96JK4 782 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 SAGE1Q9NXZ1 904 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 SRP68Q9UHB9 627 aaKnown RBP13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 SMG6Q86US8 1419 aaKnown RBP13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 CD163L1Q9NR16 1453 aa13.54□□□□□ -0.24
PPP1R3E-204ENST00000559942 NOGQ13253 232 aa13.53□□□□□ -0.24
PPP1R3E-204ENST00000559942 PKN2Q16513 984 aaKnown RBP13.53□□□□□ -0.24
PPP1R3E-204ENST00000559942 ZIC5Q96T25 663 aa13.53□□□□□ -0.24
PPP1R3E-204ENST00000559942 RNF123Q5XPI4 1314 aa13.53□□□□□ -0.24
PPP1R3E-204ENST00000559942 KTN1Q86UP2 1357 aaKnown RBP13.53□□□□□ -0.24
PPP1R3E-204ENST00000559942 TRAF5O00463 557 aa13.52□□□□□ -0.25
PPP1R3E-204ENST00000559942 CYP27B1O15528 508 aa13.52□□□□□ -0.25
PPP1R3E-204ENST00000559942 AFDNP55196 1824 aaKnown RBP13.52□□□□□ -0.25
PPP1R3E-204ENST00000559942 MYH14Q7Z406 1995 aaKnown RBP13.52□□□□□ -0.25
PPP1R3E-204ENST00000559942 MKI67P46013 3256 aaKnown RBP13.52□□□□□ -0.25
PPP1R3E-204ENST00000559942 AKAP11Q9UKA4 1901 aa13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 CNTNAP4Q9C0A0 1308 aa13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 USP42Q9H9J4 1324 aaKnown RBP13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 NME9Q86XW9 330 aa13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 STAC3Q96MF2 364 aa13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 TMOD3Q9NYL9 352 aa13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 KIAA0100Q14667 2235 aaKnown RBP13.51□□□□□ -0.25
PPP1R3E-204ENST00000559942 ZNF541Q9H0D2 1346 aa13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 CENPJQ9HC77 1338 aaPredicted RBP13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 TRPA1O75762 1119 aa13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 BICDL1Q6ZP65 573 aa13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 ZNF622Q969S3 477 aaKnown RBP eCLIP13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 COL25A1Q9BXS0 654 aaPredicted RBP13.5□□□□□ -0.25
PPP1R3E-204ENST00000559942 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
PPP1R3E-204ENST00000559942 NBPF6Q5VWK0 638 aa13.49□□□□□ -0.25
PPP1R3E-204ENST00000559942 USHBP1Q8N6Y0 703 aa13.49□□□□□ -0.25
PPP1R3E-204ENST00000559942 NBPF4Q96M43 638 aa13.49□□□□□ -0.25
PPP1R3E-204ENST00000559942 ATG3Q9NT62 314 aa13.49□□□□□ -0.25
PPP1R3E-204ENST00000559942 INSRP06213 1382 aa13.48□□□□□ -0.25
PPP1R3E-204ENST00000559942 CELF2O95319 508 aaKnown RBP13.48□□□□□ -0.25
PPP1R3E-204ENST00000559942 RNF186Q9NXI6 227 aa13.48□□□□□ -0.25
PPP1R3E-204ENST00000559942 SLC4A9Q96Q91 983 aa13.47□□□□□ -0.25
PPP1R3E-204ENST00000559942 RBM42Q9BTD8 480 aaKnown RBP13.47□□□□□ -0.25
PPP1R3E-204ENST00000559942 HOXC9P31274 260 aa13.46□□□□□ -0.25
PPP1R3E-204ENST00000559942 NKX1-1Q15270 411 aaPredicted RBP13.46□□□□□ -0.25
PPP1R3E-204ENST00000559942 COL5A3P25940 1745 aaPredicted RBP13.45□□□□□ -0.26
PPP1R3E-204ENST00000559942 AMPHP49418 695 aa13.45□□□□□ -0.26
PPP1R3E-204ENST00000559942 OTUD5Q96G74 571 aa13.45□□□□□ -0.26
PPP1R3E-204ENST00000559942 HDAC9Q9UKV0 1011 aa13.45□□□□□ -0.26
PPP1R3E-204ENST00000559942 KDRP35968 1356 aa13.45□□□□□ -0.26
PPP1R3E-204ENST00000559942 EVC2Q86UK5 1308 aa13.44□□□□□ -0.26
PPP1R3E-204ENST00000559942 ZPR1O75312 459 aa13.44□□□□□ -0.26
PPP1R3E-204ENST00000559942 SERPINB2P05120 415 aa13.44□□□□□ -0.26
PPP1R3E-204ENST00000559942 NRXN2Q9P2S2 1712 aa13.44□□□□□ -0.26
PPP1R3E-204ENST00000559942 LMOD1P29536 600 aaPredicted RBP13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 NFIXQ14938 502 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 SOGA3Q5TF21 947 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 GPC2Q8N158 579 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 SYNE4Q8N205 404 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 PRDM6Q9NQX0 595 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 ZNF831Q5JPB2 1677 aa13.43□□□□□ -0.26
PPP1R3E-204ENST00000559942 MON2Q7Z3U7 1717 aa13.42□□□□□ -0.26
PPP1R3E-204ENST00000559942 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
PPP1R3E-204ENST00000559942 FBXO46Q6PJ61 603 aaPredicted RBP13.42□□□□□ -0.26
PPP1R3E-204ENST00000559942 PDZRN3Q9UPQ7 1066 aa13.42□□□□□ -0.26
PPP1R3E-204ENST00000559942 SLX4Q8IY92 1834 aa13.41□□□□□ -0.26
PPP1R3E-204ENST00000559942 POTEFA5A3E0 1075 aa13.41□□□□□ -0.26
PPP1R3E-204ENST00000559942 KIF23Q02241 960 aaPredicted RBP13.41□□□□□ -0.26
PPP1R3E-204ENST00000559942 SCN11AQ9UI33 1791 aa13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 CRKLP46109 303 aaKnown RBP13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 CHRDL2Q6WN34 429 aa13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 USP50Q70EL3 339 aaPredicted RBP13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 ZNF408Q9H9D4 720 aa13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 CARMIL3Q8ND23 1372 aa13.4□□□□□ -0.26
PPP1R3E-204ENST00000559942 FZD9O00144 591 aa13.39□□□□□ -0.27
PPP1R3E-204ENST00000559942 EPS15P42566 896 aa13.39□□□□□ -0.27
PPP1R3E-204ENST00000559942 HUNKP57058 714 aa13.39□□□□□ -0.27
PPP1R3E-204ENST00000559942 CNKSR1Q969H4 720 aa13.39□□□□□ -0.27
PPP1R3E-204ENST00000559942 CACNA1SQ13698 1873 aa13.39□□□□□ -0.27
PPP1R3E-204ENST00000559942 SBNO2Q9Y2G9 1366 aa13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 FAM155AB1AL88 458 aaPredicted RBP13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 H0YGN5 161 aa13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 PDE6BP35913 854 aa13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 ZNF277Q9NRM2 450 aaPredicted RBP13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 RBM27Q9P2N5 1060 aaKnown RBP13.38□□□□□ -0.27
PPP1R3E-204ENST00000559942 COL9A1P20849 921 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms