RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 RAB15P59190 212 aa4.99□□□□□ -1.61
TRAV28-201ENST00000557548 USP4Q13107 963 aa4.99□□□□□ -1.61
TRAV28-201ENST00000557548 FKBP5Q13451 457 aaPredicted RBP4.99□□□□□ -1.61
TRAV28-201ENST00000557548 GAS2L2Q8NHY3 880 aa4.99□□□□□ -1.61
TRAV28-201ENST00000557548 PHF20L1A8MW92 1017 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 WEE1P30291 646 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 ARHGAP4P98171 946 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 ECM1Q16610 540 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 KRTAP5-3Q6L8H2 238 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 FBXO33Q7Z6M2 555 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 ASB16Q96NS5 453 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 C1QTNF2Q9BXJ5 285 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 DCTN4Q9UJW0 460 aa4.98□□□□□ -1.61
TRAV28-201ENST00000557548 MYCP01106 439 aaPredicted RBP4.97□□□□□ -1.61
TRAV28-201ENST00000557548 FKBP4Q02790 459 aaKnown RBP eCLIP4.97□□□□□ -1.61
TRAV28-201ENST00000557548 SF3B2Q13435 895 aaKnown RBP4.97□□□□□ -1.61
TRAV28-201ENST00000557548 ZSCAN29Q8IWY8 852 aaPredicted RBP4.97□□□□□ -1.61
TRAV28-201ENST00000557548 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.97□□□□□ -1.61
TRAV28-201ENST00000557548 WHAMMQ8TF30 809 aa4.97□□□□□ -1.61
TRAV28-201ENST00000557548 ZNF358Q9NW07 568 aa4.97□□□□□ -1.61
TRAV28-201ENST00000557548 M0R2N6 131 aa4.96□□□□□ -1.62
TRAV28-201ENST00000557548 PTCD1O75127 700 aaKnown RBP4.96□□□□□ -1.62
TRAV28-201ENST00000557548 RECKO95980 971 aa4.96□□□□□ -1.62
TRAV28-201ENST00000557548 SCTRP47872 440 aa4.96□□□□□ -1.62
TRAV28-201ENST00000557548 LAMC2Q13753 1193 aa4.96□□□□□ -1.62
TRAV28-201ENST00000557548 NAA30Q147X3 362 aaPredicted RBP4.96□□□□□ -1.62
TRAV28-201ENST00000557548 SEPT12Q8IYM1 358 aa4.96□□□□□ -1.62
TRAV28-201ENST00000557548 VAMP1P23763 118 aa4.95□□□□□ -1.62
TRAV28-201ENST00000557548 SH3BP2P78314 561 aa4.95□□□□□ -1.62
TRAV28-201ENST00000557548 TRIM32Q13049 653 aa4.95□□□□□ -1.62
TRAV28-201ENST00000557548 TRMT44Q8IYL2 757 aaKnown RBP4.95□□□□□ -1.62
TRAV28-201ENST00000557548 RGL4Q8IZJ4 473 aa4.95□□□□□ -1.62
TRAV28-201ENST00000557548 HELQQ8TDG4 1101 aa4.95□□□□□ -1.62
TRAV28-201ENST00000557548 KCTD15Q96SI1 283 aaPredicted RBP4.95□□□□□ -1.62
TRAV28-201ENST00000557548 CDV3Q9UKY7 258 aaKnown RBP4.95□□□□□ -1.62
TRAV28-201ENST00000557548 TMEM229AB2RXF0 380 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 STAU1O95793 577 aaKnown RBP4.94□□□□□ -1.62
TRAV28-201ENST00000557548 ALDH1A1P00352 501 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 IGFBP4P22692 258 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 TSNAXIP1Q2TAA8 658 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 EAPPQ56P03 285 aaPredicted RBP4.94□□□□□ -1.62
TRAV28-201ENST00000557548 ZMYM1Q5SVZ6 1142 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 CCDC125Q86Z20 511 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 GPR161Q8N6U8 529 aaKnown RBP4.94□□□□□ -1.62
TRAV28-201ENST00000557548 SCG3Q8WXD2 468 aaKnown RBP4.94□□□□□ -1.62
TRAV28-201ENST00000557548 COL26A1Q96A83 441 aa4.94□□□□□ -1.62
TRAV28-201ENST00000557548 COL25A1Q9BXS0 654 aaPredicted RBP4.94□□□□□ -1.62
TRAV28-201ENST00000557548 SOBPA7XYQ1 873 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 ERVH48-1M5A8F1 160 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 FOXO3O43524 673 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 P4HBP07237 508 aaKnown RBP4.93□□□□□ -1.62
TRAV28-201ENST00000557548 MPSTP25325 297 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 SCARF1Q14162 830 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 INTS6LQ5JSJ4 861 aaKnown RBP4.93□□□□□ -1.62
TRAV28-201ENST00000557548 TNS4Q8IZW8 715 aa4.93□□□□□ -1.62
TRAV28-201ENST00000557548 ESF1Q9H501 851 aaKnown RBP4.93□□□□□ -1.62
TRAV28-201ENST00000557548 FAM13AO94988 1023 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 YBX3P16989 372 aaKnown RBP eCLIP4.92□□□□□ -1.62
TRAV28-201ENST00000557548 SCNN1DP51172 638 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 GDF10P55107 478 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 COL19A1Q14993 1142 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 VASH1Q7L8A9 365 aaPredicted RBP4.92□□□□□ -1.62
TRAV28-201ENST00000557548 TMC7Q7Z402 723 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 CHMP7Q8WUX9 453 aaPredicted RBP4.92□□□□□ -1.62
TRAV28-201ENST00000557548 VTI1AQ96AJ9 217 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 C8orf37Q96NL8 207 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 KRTAP4-5Q9BYR2 181 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 BCL11AQ9H165 835 aa4.92□□□□□ -1.62
TRAV28-201ENST00000557548 TSPAN10Q9H1Z9 355 aaPredicted RBP4.92□□□□□ -1.62
TRAV28-201ENST00000557548 ARID1BQ8NFD5 2236 aaPredicted RBP4.91□□□□□ -1.62
TRAV28-201ENST00000557548 NDUFB5O43674 189 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 NPR3P17342 541 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 ERVK-9P63128 1117 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 CC2D2BQ6DHV5 1058 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 RBCK1Q9BYM8 510 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 KRTAP4-11Q9BYQ6 195 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 SAP130Q9H0E3 1048 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 OSBPL3Q9H4L5 887 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 CYLDQ9NQC7 956 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 TMPRSS4Q9NRS4 437 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 SERTAD1Q9UHV2 236 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 ATAD2Q6PL18 1390 aa4.91□□□□□ -1.62
TRAV28-201ENST00000557548 BACH1O14867 736 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 EPHA4P54764 986 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 ZC3H6P61129 1189 aaKnown RBP4.9□□□□□ -1.63
TRAV28-201ENST00000557548 MAP3K10Q02779 954 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 TBCELQ5QJ74 424 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 RC3H1Q5TC82 1133 aaKnown RBP4.9□□□□□ -1.63
TRAV28-201ENST00000557548 MRPL14Q6P1L8 145 aaKnown RBP4.9□□□□□ -1.63
TRAV28-201ENST00000557548 C16orf46Q6P387 395 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 BEND7Q8N7W2 519 aaPredicted RBP4.9□□□□□ -1.63
TRAV28-201ENST00000557548 TMC1Q8TDI8 760 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 SREK1Q8WXA9 508 aaKnown RBP4.9□□□□□ -1.63
TRAV28-201ENST00000557548 BACH2Q9BYV9 841 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 ETNK1Q9HBU6 452 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 BRPF3Q9ULD4 1205 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 MAP4K5Q9Y4K4 846 aa4.9□□□□□ -1.63
TRAV28-201ENST00000557548 A0A1W2PRU2 124 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 WASLO00401 505 aaPredicted RBP4.89□□□□□ -1.63
TRAV28-201ENST00000557548 TREHO43280 583 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms