RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 SPAG9O60271 1321 aaKnown RBP7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 KCNA1Q09470 495 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 TJAP1Q5JTD0 557 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 CC2D1BQ5T0F9 858 aaKnown RBP7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 RNF135Q8IUD6 432 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 EXOC6Q8TAG9 804 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 CEP126Q9P2H0 1117 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 KNSTRNQ9Y448 316 aa7.83□□□□□ -1.16
CHMP4A-210ENST00000552620 CHD1O14646 1710 aa7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 LZTS3O60299 673 aaPredicted RBP7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 KCNC4Q03721 635 aa7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 DZIP3Q86Y13 1208 aaKnown RBP7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 NGEFQ8N5V2 710 aa7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 NEURL4Q96JN8 1562 aa7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 KANK1Q14678 1352 aa7.82□□□□□ -1.16
CHMP4A-210ENST00000552620 SCAF11Q99590 1463 aaKnown RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 ELOAQ14241 798 aaKnown RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 AGERQ15109 404 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 MAP7D1Q3KQU3 841 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 SH3BP5LQ7L8J4 393 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 BPHLQ86WA6 291 aaPredicted RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 ZNF516Q92618 1163 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 OCSTAMPQ9BR26 566 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 ABCC1P33527 1531 aa7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 EIF3AQ14152 1382 aaKnown RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 RNF17Q9BXT8 1623 aaKnown RBP7.81□□□□□ -1.16
CHMP4A-210ENST00000552620 TRAPPC8Q9Y2L5 1435 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 TRPM2O94759 1503 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 A0A0G2JS52 829 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 MAGEB6P1A0A0J9YX57 407 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 PPP2R1AP30153 589 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 WDR43Q15061 677 aaKnown RBP eCLIP7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 PTCRAQ6ISU1 281 aaPredicted RBP7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 FAM174AQ8TBP5 190 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 BACH2Q9BYV9 841 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 ADAMTS8Q9UP79 889 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 WDR7Q9Y4E6 1490 aa7.8□□□□□ -1.16
CHMP4A-210ENST00000552620 PIK3C2GO75747 1445 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 ATP5J2-PTCD1G3V325 749 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 S1PR4O95977 384 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 LARP1Q6PKG0 1096 aaKnown RBP7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 DEPDC4Q8N2C3 294 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 PLPP7Q8NBV4 271 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 CARD14Q9BXL6 1004 aa7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 MKRN1Q9UHC7 482 aaKnown RBP7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 FCF1Q9Y324 198 aaKnown RBP7.79□□□□□ -1.16
CHMP4A-210ENST00000552620 ZCCHC11Q5TAX3 1644 aaKnown RBP7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 MADDQ8WXG6 1647 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 KIAA1210Q9ULL0 1709 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 TMEM88BA6NKF7 163 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 FAM196BA6NMK8 535 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 NCOA4Q13772 614 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 EML3Q32P44 896 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 PHTF2Q8N3S3 785 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 GZF1Q9H116 711 aaPredicted RBP7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 BCL11AQ9H165 835 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 NOVA2Q9UNW9 492 aaKnown RBP7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 SYNMO15061 1565 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 ASXL1Q8IXJ9 1541 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 ZNF521Q96K83 1311 aa7.78□□□□□ -1.16
CHMP4A-210ENST00000552620 IQGAP1P46940 1657 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 TMCO4Q5TGY1 634 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 RNF20Q5VTR2 975 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 CENPQQ7L2Z9 268 aaPredicted RBP7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 SH3RF1Q7Z6J0 888 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 TRIM50Q86XT4 487 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 TRMT2AQ8IZ69 625 aaKnown RBP7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 ZNF511Q8NB15 262 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 BAP1Q92560 729 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 SLC10A4Q96EP9 437 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 CRBNQ96SW2 442 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 DEPDC5O75140 1603 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 CLASP1Q7Z460 1538 aa7.77□□□□□ -1.17
CHMP4A-210ENST00000552620 TET3O43151 1660 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 ERCC6L2Q5T890 1561 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 VWDEQ8N2E2 1590 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 CEP152O94986 1710 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 SPHKAPQ2M3C7 1700 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 SENP3-EIF4A1A0A087X0R7 540 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L15C9J2P7 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L10C9JJH3 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L13C9JLJ4 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L12C9JPN9 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L11C9JVI0 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L21D6R901 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L18D6R9N7 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L22D6RA61 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L17D6RBQ6 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L19D6RCP7 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L20D6RJB6 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 RASA1P20936 1047 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 DEKP35659 375 aaKnown RBP7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 SLFN5Q08AF3 891 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP17L24Q0WX57 530 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 NBPF20Q3BBV1 942 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 LINC01559Q495D7 138 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 DUSP27Q5VZP5 1158 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 AFAP1Q8N556 730 aa7.76□□□□□ -1.17
CHMP4A-210ENST00000552620 USP35Q9P2H5 1018 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms