RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 C5P01031 1676 aa27.77■■■□□ 2.04
NEK3-202ENST00000550841 CICQ96RK0 1608 aaPredicted RBP27.77■■■□□ 2.04
NEK3-202ENST00000550841 SOS1Q07889 1333 aaPredicted RBP27.76■■■□□ 2.03
NEK3-202ENST00000550841 CRKLP46109 303 aaKnown RBP27.76■■■□□ 2.03
NEK3-202ENST00000550841 SLFN5Q08AF3 891 aa27.75■■■□□ 2.03
NEK3-202ENST00000550841 CCDC87Q9NVE4 849 aa27.75■■■□□ 2.03
NEK3-202ENST00000550841 ZBED9Q6R2W3 1325 aa27.74■■■□□ 2.03
NEK3-202ENST00000550841 FANCIQ9NVI1 1328 aa27.74■■■□□ 2.03
NEK3-202ENST00000550841 DUSP27Q5VZP5 1158 aa27.74■■■□□ 2.03
NEK3-202ENST00000550841 FLAD1Q8NFF5 587 aa27.74■■■□□ 2.03
NEK3-202ENST00000550841 SPINK5Q9NQ38 1064 aaPredicted RBP27.74■■■□□ 2.03
NEK3-202ENST00000550841 C4BP0C0L5 1744 aa27.73■■■□□ 2.03
NEK3-202ENST00000550841 TJP1Q07157 1748 aa27.73■■■□□ 2.03
NEK3-202ENST00000550841 PRAMEF22A3QJZ6 481 aa27.73■■■□□ 2.03
NEK3-202ENST00000550841 RPS6KA4O75676 772 aa27.73■■■□□ 2.03
NEK3-202ENST00000550841 ZNF827Q17R98 1081 aa27.73■■■□□ 2.03
NEK3-202ENST00000550841 RTCBQ9Y3I0 505 aaKnown RBP27.73■■■□□ 2.03
NEK3-202ENST00000550841 GNPATO15228 680 aa27.72■■■□□ 2.03
NEK3-202ENST00000550841 INTS5Q6P9B9 1019 aaKnown RBP27.72■■■□□ 2.03
NEK3-202ENST00000550841 COL5A3P25940 1745 aaPredicted RBP27.71■■■□□ 2.03
NEK3-202ENST00000550841 ZBTB7AO95365 584 aa27.7■■■□□ 2.02
NEK3-202ENST00000550841 EIF2S2P20042 333 aaKnown RBP27.7■■■□□ 2.02
NEK3-202ENST00000550841 SSFA2P28290 1259 aa27.7■■■□□ 2.02
NEK3-202ENST00000550841 KRT24Q2M2I5 525 aa27.7■■■□□ 2.02
NEK3-202ENST00000550841 NPM2Q86SE8 214 aaKnown RBP27.7■■■□□ 2.02
NEK3-202ENST00000550841 C8orf58Q8NAV2 365 aa27.7■■■□□ 2.02
NEK3-202ENST00000550841 A1BGP04217 495 aa27.69■■■□□ 2.02
NEK3-202ENST00000550841 ADRA2BP18089 450 aa27.69■■■□□ 2.02
NEK3-202ENST00000550841 CDCA7LQ96GN5 454 aa27.69■■■□□ 2.02
NEK3-202ENST00000550841 PDGFDQ9GZP0 370 aaPredicted RBP27.69■■■□□ 2.02
NEK3-202ENST00000550841 ERBB4Q15303 1308 aa27.68■■■□□ 2.02
NEK3-202ENST00000550841 ELL2O00472 640 aaPredicted RBP27.68■■■□□ 2.02
NEK3-202ENST00000550841 CANXP27824 592 aaKnown RBP27.68■■■□□ 2.02
NEK3-202ENST00000550841 EXOSC9Q06265 439 aaKnown RBP27.68■■■□□ 2.02
NEK3-202ENST00000550841 TRAPPC3LQ5T215 181 aa27.68■■■□□ 2.02
NEK3-202ENST00000550841 TRMT2AQ8IZ69 625 aaKnown RBP27.68■■■□□ 2.02
NEK3-202ENST00000550841 YY1P25490 414 aa27.67■■■□□ 2.02
NEK3-202ENST00000550841 TWISTNBQ3B726 338 aaPredicted RBP27.67■■■□□ 2.02
NEK3-202ENST00000550841 ATF5Q9Y2D1 282 aaPredicted RBP27.67■■■□□ 2.02
NEK3-202ENST00000550841 ZBTB1Q9Y2K1 713 aa27.67■■■□□ 2.02
NEK3-202ENST00000550841 MYH14Q7Z406 1995 aaKnown RBP27.66■■■□□ 2.02
NEK3-202ENST00000550841 IL6STP40189 918 aaPredicted RBP27.66■■■□□ 2.02
NEK3-202ENST00000550841 HDGFL1Q5TGJ6 251 aa27.66■■■□□ 2.02
NEK3-202ENST00000550841 A0A087WZG4 1122 aa27.65■■■□□ 2.02
NEK3-202ENST00000550841 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.65■■■□□ 2.02
NEK3-202ENST00000550841 TSPYL6Q8N831 410 aa27.65■■■□□ 2.02
NEK3-202ENST00000550841 CCDC30Q5VVM6 783 aa27.64■■■□□ 2.02
NEK3-202ENST00000550841 LAMB4A4D0S4 1761 aa27.63■■■□□ 2.01
NEK3-202ENST00000550841 MSH5O43196 834 aa27.63■■■□□ 2.01
NEK3-202ENST00000550841 PHF14O94880 888 aa27.63■■■□□ 2.01
NEK3-202ENST00000550841 EIF5P55010 431 aaKnown RBP27.63■■■□□ 2.01
NEK3-202ENST00000550841 PNPLA7Q6ZV29 1317 aa27.63■■■□□ 2.01
NEK3-202ENST00000550841 RFC4P35249 363 aa27.62■■■□□ 2.01
NEK3-202ENST00000550841 DBF4Q9UBU7 674 aaPredicted RBP27.62■■■□□ 2.01
NEK3-202ENST00000550841 VAMP4O75379 141 aa27.61■■■□□ 2.01
NEK3-202ENST00000550841 PTGER2P43116 358 aa27.61■■■□□ 2.01
NEK3-202ENST00000550841 COL23A1Q86Y22 540 aaPredicted RBP27.61■■■□□ 2.01
NEK3-202ENST00000550841 NECTIN2Q92692 538 aa27.61■■■□□ 2.01
NEK3-202ENST00000550841 ARHGEF1Q92888 912 aaKnown RBP27.61■■■□□ 2.01
NEK3-202ENST00000550841 DDX21Q9NR30 783 aaKnown RBP eCLIP27.61■■■□□ 2.01
NEK3-202ENST00000550841 UBR3Q6ZT12 1888 aa27.61■■■□□ 2.01
NEK3-202ENST00000550841 CASZ1Q86V15 1759 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 NBPF26B4DH59 902 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 NBPF10Q6P3W6 841 aaKnown RBP27.6■■■□□ 2.01
NEK3-202ENST00000550841 NBPF15Q8N660 670 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 SLC16A10Q8TF71 515 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 MTFR1LQ9H019 292 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 QSER1Q2KHR3 1735 aa27.6■■■□□ 2.01
NEK3-202ENST00000550841 CT47B1P0C2W7 299 aaPredicted RBP27.59■■■□□ 2.01
NEK3-202ENST00000550841 ZNF330Q9Y3S2 320 aaPredicted RBP27.59■■■□□ 2.01
NEK3-202ENST00000550841 MYL6BP14649 208 aa27.58■■■□□ 2.01
NEK3-202ENST00000550841 YTHDC1Q96MU7 727 aaKnown RBP27.58■■■□□ 2.01
NEK3-202ENST00000550841 STK31Q9BXU1 1019 aa27.58■■■□□ 2.01
NEK3-202ENST00000550841 ZPR1O75312 459 aa27.57■■■□□ 2
NEK3-202ENST00000550841 PIP4K2AP48426 406 aaPredicted RBP27.57■■■□□ 2
NEK3-202ENST00000550841 PDIA6Q15084 440 aa27.57■■■□□ 2
NEK3-202ENST00000550841 AMIGO3Q86WK7 504 aa27.57■■■□□ 2
NEK3-202ENST00000550841 ZNF428Q96B54 188 aa27.57■■■□□ 2
NEK3-202ENST00000550841 HYPKQ9NX55 129 aa27.57■■■□□ 2
NEK3-202ENST00000550841 COL15A1P39059 1388 aa27.57■■■□□ 2
NEK3-202ENST00000550841 SMIM5Q71RC9 77 aa27.56■■■□□ 2
NEK3-202ENST00000550841 ARXQ96QS3 562 aa27.56■■■□□ 2
NEK3-202ENST00000550841 CHPF2Q9P2E5 772 aa27.56■■■□□ 2
NEK3-202ENST00000550841 TUBGCP6Q96RT7 1819 aa27.54■■■□□ 2
NEK3-202ENST00000550841 NARFQ9UHQ1 456 aa27.54■■■□□ 2
NEK3-202ENST00000550841 DZIP3Q86Y13 1208 aaKnown RBP27.53■■■□□ 2
NEK3-202ENST00000550841 FHDC1Q9C0D6 1143 aaPredicted RBP27.53■■■□□ 2
NEK3-202ENST00000550841 SYT17Q9BSW7 474 aa27.52■■■□□ 2
NEK3-202ENST00000550841 PROSER3Q2NL68 480 aa27.51■■□□□ 1.99
NEK3-202ENST00000550841 KIF6Q6ZMV9 814 aa27.51■■□□□ 1.99
NEK3-202ENST00000550841 TBC1D2BQ9UPU7 963 aa27.51■■□□□ 1.99
NEK3-202ENST00000550841 USP42Q9H9J4 1324 aaKnown RBP27.5■■□□□ 1.99
NEK3-202ENST00000550841 RGL2O15211 777 aa27.5■■□□□ 1.99
NEK3-202ENST00000550841 ANXA1P04083 346 aa27.5■■□□□ 1.99
NEK3-202ENST00000550841 SLC4A2P04920 1241 aa27.5■■□□□ 1.99
NEK3-202ENST00000550841 NLGN1Q8N2Q7 840 aa27.5■■□□□ 1.99
NEK3-202ENST00000550841 COPS6Q7L5N1 327 aa27.49■■□□□ 1.99
NEK3-202ENST00000550841 LRP10Q7Z4F1 713 aa27.49■■□□□ 1.99
NEK3-202ENST00000550841 SGIP1Q9BQI5 828 aa27.49■■□□□ 1.99
NEK3-202ENST00000550841 ERVV-1B6SEH8 477 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms