RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 DDX17Q92841 729 aaKnown RBP9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 TNS3Q68CZ2 1445 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 FAM208AQ9UK61 1670 aaKnown RBP9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 DMTNQ08495 405 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 GRPEL1Q9HAV7 217 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 ABCC4O15439 1325 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 ABCC6O95255 1503 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 ELL2O00472 640 aaPredicted RBP9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 IPO8O15397 1037 aaKnown RBP9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 FAM13BQ9NYF5 915 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 AXIN2Q9Y2T1 843 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 CEMIPQ8WUJ3 1361 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 IL17REQ8NFR9 667 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 LRRC59Q96AG4 307 aaKnown RBP9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 CARD10Q9BWT7 1032 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 ANTXR1Q9H6X2 564 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 UPF2Q9HAU5 1272 aaKnown RBP9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 ZBTB40Q9NUA8 1239 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 ADAMTS7Q9UKP4 1686 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 DDX19BQ9UMR2 479 aa9.84□□□□□ -0.83
PDLIM5-221ENST00000542407 ZNF335Q9H4Z2 1342 aaPredicted RBP9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 GNAT3A8MTJ3 354 aa9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 LMOD2Q6P5Q4 547 aa9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 KDM3BQ7LBC6 1761 aa9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 NPHP3Q7Z494 1330 aa9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 ITPRIPQ8IWB1 547 aa9.83□□□□□ -0.84
PDLIM5-221ENST00000542407 EGFL6Q8IUX8 553 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 RTF1Q92541 710 aaKnown RBP9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 TBC1D2Q9BYX2 928 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 MIS18AQ9NYP9 233 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 SPATA31A3Q5VYP0 1347 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 BRINP3Q76B58 766 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 ANKRD24Q8TF21 1146 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 SH3BP1Q9Y3L3 701 aa9.82□□□□□ -0.84
PDLIM5-221ENST00000542407 ABCA3Q99758 1704 aa9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 VIRMAQ69YN4 1812 aaKnown RBP9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 ERBB3P21860 1342 aa9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 HDAC1Q13547 482 aaPredicted RBP9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 ZBTB7BO15156 539 aaPredicted RBP9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 MAP7D2Q96T17 732 aa9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 TSPYL4Q9UJ04 414 aa9.81□□□□□ -0.84
PDLIM5-221ENST00000542407 SIPA1L3O60292 1781 aaPredicted RBP9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 ZBTB7CA1YPR0 619 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 MAFGO15525 162 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 KIF20AO95235 890 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 BABAM1Q9NWV8 329 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 OVOS2A0A0G2JMS6 1433 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 NHSL1Q5SYE7 1610 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 CPDO75976 1380 aa9.8□□□□□ -0.84
PDLIM5-221ENST00000542407 RWDD1Q9H446 243 aaPredicted RBP9.79□□□□□ -0.84
PDLIM5-221ENST00000542407 TAF3Q5VWG9 929 aa9.79□□□□□ -0.84
PDLIM5-221ENST00000542407 SLC24A3Q9HC58 644 aa9.79□□□□□ -0.84
PDLIM5-221ENST00000542407 N4BP2Q86UW6 1770 aaPredicted RBP9.79□□□□□ -0.84
PDLIM5-221ENST00000542407 HOXD11P31277 338 aaPredicted RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 ZC3H6P61129 1189 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 API5Q9BZZ5 524 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 SOS2Q07890 1332 aaPredicted RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 TAF7Q15545 349 aaPredicted RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 SPOCK2Q92563 424 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 AKAP4Q5JQC9 854 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 INTS3Q68E01 1043 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 CABLES1Q8TDN4 633 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 LGR6Q9HBX8 967 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 PDZRN3Q9UPQ7 1066 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 R3HCC1Q9Y3T6 440 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 PKD1L3Q7Z443 1732 aa9.78□□□□□ -0.84
PDLIM5-221ENST00000542407 PTPRCP08575 1304 aa9.77□□□□□ -0.84
PDLIM5-221ENST00000542407 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 SMC5Q8IY18 1101 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 SLAIN2Q9P270 581 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 MEGF6O75095 1541 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 SOS1Q07889 1333 aaPredicted RBP9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 PLEKHG2Q9H7P9 1386 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 AMOTQ4VCS5 1084 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 CHMP5Q9NZZ3 219 aa9.77□□□□□ -0.85
PDLIM5-221ENST00000542407 IRF6O14896 467 aa9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 MSNP26038 577 aaKnown RBP9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 PLEKHO1Q53GL0 409 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 MPNDQ8N594 471 aa9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 ZNF530Q6P9A1 599 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 G2E3Q7L622 706 aa9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 GAS2L3Q86XJ1 694 aa9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 ATP10DQ9P241 1426 aa9.76□□□□□ -0.85
PDLIM5-221ENST00000542407 SEMA3FQ13275 785 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 SIRT2Q8IXJ6 389 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 CEP120Q8N960 986 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 SCN11AQ9UI33 1791 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 RNMTO43148 476 aaKnown RBP9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 CHMP4CQ96CF2 233 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 TBC1D32Q96NH3 1257 aa9.75□□□□□ -0.85
PDLIM5-221ENST00000542407 HEG1Q9ULI3 1381 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 KDM6AO15550 1401 aaPredicted RBP9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 DDX11L8A8MPP1 907 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 EIF4A1P60842 406 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 SLC20A2Q08357 652 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 MRC1P22897 1456 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 CACNA1FO60840 1977 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 PRR29P0C7W0 189 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 MPRIPQ6WCQ1 1025 aa9.74□□□□□ -0.85
PDLIM5-221ENST00000542407 GEMIN8Q9NWZ8 242 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms