RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 KIF16BQ96L93 1317 aa13.67□□□□□ -0.22
LEMD3-202ENST00000539442 KCNQ3O43525 872 aa13.67□□□□□ -0.22
LEMD3-202ENST00000539442 BCAR3O75815 825 aa13.67□□□□□ -0.22
LEMD3-202ENST00000539442 SSH1Q8WYL5 1049 aa13.67□□□□□ -0.22
LEMD3-202ENST00000539442 DOT1LQ8TEK3 1739 aa13.67□□□□□ -0.22
LEMD3-202ENST00000539442 SLC39A6Q13433 755 aa13.66□□□□□ -0.22
LEMD3-202ENST00000539442 PIGBQ92521 554 aa13.66□□□□□ -0.22
LEMD3-202ENST00000539442 FMNL2Q96PY5 1086 aa13.66□□□□□ -0.22
LEMD3-202ENST00000539442 GIGYF1O75420 1035 aaPredicted RBP13.65□□□□□ -0.22
LEMD3-202ENST00000539442 CCDC30Q5VVM6 783 aa13.65□□□□□ -0.22
LEMD3-202ENST00000539442 BCL2L13Q9BXK5 485 aa13.65□□□□□ -0.22
LEMD3-202ENST00000539442 KCPQ6ZWJ8 1503 aa13.64□□□□□ -0.23
LEMD3-202ENST00000539442 UBR2Q8IWV8 1755 aa13.64□□□□□ -0.23
LEMD3-202ENST00000539442 RXRBP28702 533 aa13.64□□□□□ -0.23
LEMD3-202ENST00000539442 PRIM1P49642 420 aaKnown RBP13.64□□□□□ -0.23
LEMD3-202ENST00000539442 HDGFL1Q5TGJ6 251 aa13.64□□□□□ -0.23
LEMD3-202ENST00000539442 MRPL50Q8N5N7 158 aaKnown RBP13.64□□□□□ -0.23
LEMD3-202ENST00000539442 ZNF496Q96IT1 587 aaPredicted RBP13.64□□□□□ -0.23
LEMD3-202ENST00000539442 ITGB4P16144 1822 aa13.64□□□□□ -0.23
LEMD3-202ENST00000539442 IPO8O15397 1037 aaKnown RBP13.63□□□□□ -0.23
LEMD3-202ENST00000539442 SNRPA1P09661 255 aaKnown RBP13.63□□□□□ -0.23
LEMD3-202ENST00000539442 CANXP27824 592 aaKnown RBP13.63□□□□□ -0.23
LEMD3-202ENST00000539442 ZKSCAN2Q63HK3 967 aa13.63□□□□□ -0.23
LEMD3-202ENST00000539442 SYTL4Q96C24 671 aaPredicted RBP13.63□□□□□ -0.23
LEMD3-202ENST00000539442 STK31Q9BXU1 1019 aa13.63□□□□□ -0.23
LEMD3-202ENST00000539442 RGS17Q9UGC6 210 aaPredicted RBP13.63□□□□□ -0.23
LEMD3-202ENST00000539442 MS4A1P11836 297 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 PDE3AQ14432 1141 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 ERICH6BQ5W0A0 696 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 KRT27Q7Z3Y8 459 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 VSIG10Q8N0Z9 540 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 ARHGAP45Q92619 1136 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 ACSBG1Q96GR2 724 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 ATG3Q9NT62 314 aa13.62□□□□□ -0.23
LEMD3-202ENST00000539442 PLIN1O60240 522 aa13.61□□□□□ -0.23
LEMD3-202ENST00000539442 FRAT1Q92837 279 aaPredicted RBP13.61□□□□□ -0.23
LEMD3-202ENST00000539442 SMARCC1Q92922 1105 aaPredicted RBP13.61□□□□□ -0.23
LEMD3-202ENST00000539442 ASAP1Q9ULH1 1129 aa13.61□□□□□ -0.23
LEMD3-202ENST00000539442 NHSQ6T4R5 1651 aa13.6□□□□□ -0.23
LEMD3-202ENST00000539442 TEX13AQ9BXU3 409 aaPredicted RBP13.6□□□□□ -0.23
LEMD3-202ENST00000539442 NOB1Q9ULX3 412 aaKnown RBP13.6□□□□□ -0.23
LEMD3-202ENST00000539442 GTF3C3Q9Y5Q9 886 aa13.6□□□□□ -0.23
LEMD3-202ENST00000539442 PTPRCP08575 1304 aa13.6□□□□□ -0.23
LEMD3-202ENST00000539442 ERBB4Q15303 1308 aa13.6□□□□□ -0.23
LEMD3-202ENST00000539442 RGS12O14924 1447 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 LAMB4A4D0S4 1761 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 EIF2S2P20042 333 aaKnown RBP13.59□□□□□ -0.23
LEMD3-202ENST00000539442 FKBP8Q14318 412 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 POTEAQ6S8J7 498 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 ATF7IPQ6VMQ6 1270 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 FAM196AQ6ZSG2 479 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 API5Q9BZZ5 524 aaKnown RBP13.59□□□□□ -0.23
LEMD3-202ENST00000539442 DBF4Q9UBU7 674 aaPredicted RBP13.59□□□□□ -0.23
LEMD3-202ENST00000539442 C5P01031 1676 aa13.59□□□□□ -0.23
LEMD3-202ENST00000539442 PRAMEF22A3QJZ6 481 aa13.58□□□□□ -0.24
LEMD3-202ENST00000539442 TCERG1O14776 1098 aaKnown RBP13.58□□□□□ -0.24
LEMD3-202ENST00000539442 KCNQ2O43526 872 aa13.58□□□□□ -0.24
LEMD3-202ENST00000539442 PTCD1O75127 700 aaKnown RBP13.58□□□□□ -0.24
LEMD3-202ENST00000539442 PALLDQ8WX93 1383 aa13.58□□□□□ -0.24
LEMD3-202ENST00000539442 TRIM27P14373 513 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 MAMSTRQ6ZN01 415 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 ILDR1Q86SU0 546 aaPredicted RBP13.57□□□□□ -0.24
LEMD3-202ENST00000539442 FTSJ3Q8IY81 847 aaKnown RBP13.57□□□□□ -0.24
LEMD3-202ENST00000539442 DZIP1LQ8IYY4 767 aaKnown RBP13.57□□□□□ -0.24
LEMD3-202ENST00000539442 NECTIN2Q92692 538 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 DDX21Q9NR30 783 aaKnown RBP eCLIP13.57□□□□□ -0.24
LEMD3-202ENST00000539442 HYPKQ9NX55 129 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 CHPF2Q9P2E5 772 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 USP16Q9Y5T5 823 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 BRWD3Q6RI45 1802 aa13.57□□□□□ -0.24
LEMD3-202ENST00000539442 CICQ96RK0 1608 aaPredicted RBP13.57□□□□□ -0.24
LEMD3-202ENST00000539442 CACNA1FO60840 1977 aa13.56□□□□□ -0.24
LEMD3-202ENST00000539442 IRX6P78412 446 aaPredicted RBP13.56□□□□□ -0.24
LEMD3-202ENST00000539442 FLIIQ13045 1269 aa13.56□□□□□ -0.24
LEMD3-202ENST00000539442 FAM182BQ5T319 152 aa13.56□□□□□ -0.24
LEMD3-202ENST00000539442 C20orf194Q5TEA3 1177 aa13.56□□□□□ -0.24
LEMD3-202ENST00000539442 FAM163AQ96GL9 167 aaPredicted RBP13.56□□□□□ -0.24
LEMD3-202ENST00000539442 BCL11BQ9C0K0 894 aaPredicted RBP13.56□□□□□ -0.24
LEMD3-202ENST00000539442 ZNF831Q5JPB2 1677 aa13.55□□□□□ -0.24
LEMD3-202ENST00000539442 ABCC4O15439 1325 aa13.55□□□□□ -0.24
LEMD3-202ENST00000539442 LOC102724428A0A0B4J2F2 783 aa13.54□□□□□ -0.24
LEMD3-202ENST00000539442 GALR2O43603 387 aaPredicted RBP13.54□□□□□ -0.24
LEMD3-202ENST00000539442 STARD3NLO95772 234 aa13.54□□□□□ -0.24
LEMD3-202ENST00000539442 SIK1P57059 783 aa13.54□□□□□ -0.24
LEMD3-202ENST00000539442 PDIA6Q15084 440 aa13.54□□□□□ -0.24
LEMD3-202ENST00000539442 SBF2Q86WG5 1849 aa13.54□□□□□ -0.24
LEMD3-202ENST00000539442 BTAF1O14981 1849 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 KAT6BQ8WYB5 2073 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 RLBP1P12271 317 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 FKBP5Q13451 457 aaPredicted RBP13.53□□□□□ -0.24
LEMD3-202ENST00000539442 AAMPQ13685 434 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 MVPQ14764 893 aaKnown RBP13.53□□□□□ -0.24
LEMD3-202ENST00000539442 G2E3Q7L622 706 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 DNAJC10Q8IXB1 793 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 PANK1Q8TE04 598 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 CLUAP1Q96AJ1 413 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 SLC4A9Q96Q91 983 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 CRBNQ96SW2 442 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 PXDNLA1KZ92 1463 aa13.53□□□□□ -0.24
LEMD3-202ENST00000539442 CYP19A1P11511 503 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms