RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 DUSP27Q5VZP5 1158 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 PDCD7Q8N8D1 485 aaKnown RBP4.56□□□□□ -1.68
MCF2-210ENST00000536274 GBP4Q96PP9 640 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 C1orf115Q9H7X2 142 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 ADAMTS8Q9UP79 889 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 ITSN1Q15811 1721 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 THSD7AQ9UPZ6 1657 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 PTMSP20962 102 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 GTF2F1P35269 517 aaKnown RBP eCLIP4.56□□□□□ -1.68
MCF2-210ENST00000536274 RAD51AP2Q09MP3 1159 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 RAB3GAP1Q15042 981 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 NFATC2IPQ8NCF5 419 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 GPT2Q8TD30 523 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 MYBBP1AQ9BQG0 1328 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 COL14A1Q05707 1796 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 DDIT3P35638 169 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 GTF2A1P52655 376 aaPredicted RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 PTPRUQ92729 1446 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 UPF1Q92900 1129 aaKnown RBP eCLIP4.55□□□□□ -1.68
MCF2-210ENST00000536274 DRC1Q96MC2 740 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 TMEM63CQ9P1W3 806 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 SLAIN2Q9P270 581 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 CCDC39Q9UFE4 941 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 PLEKHH1Q9ULM0 1364 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 NRXN1Q9ULB1 1477 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 TNS1Q9HBL0 1735 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 NCBP1Q09161 790 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 E2F4Q16254 413 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 POTEAQ6S8J7 498 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 NEK11Q8NG66 645 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 ISY1Q9ULR0 285 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 CFAP65Q6ZU64 1925 aaKnown RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 ABCC6O95255 1503 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 C1orf167Q5SNV9 1468 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 RALGAPBQ86X10 1494 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 TRPM3Q9HCF6 1732 aaPredicted RBP4.55□□□□□ -1.68
MCF2-210ENST00000536274 SLIT2O94813 1529 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 LMOD3Q0VAK6 560 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 OGFRQ9NZT2 677 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 USP25Q9UHP3 1055 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 CTNNA3Q9UI47 895 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 PYCARDQ9ULZ3 195 aa4.55□□□□□ -1.68
MCF2-210ENST00000536274 ALS2Q96Q42 1657 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 ANKRD65E5RJM6 399 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 DHX16O60231 1041 aaKnown RBP4.54□□□□□ -1.68
MCF2-210ENST00000536274 DTNBO60941 627 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 PIP4K2BP78356 416 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 KLHL40Q2TBA0 621 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 SPC24Q8NBT2 197 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 PARD3Q8TEW0 1356 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 SOS2Q07890 1332 aaPredicted RBP4.54□□□□□ -1.68
MCF2-210ENST00000536274 ANKARQ7Z5J8 1434 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 CLGNO14967 610 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 POTEJP0CG39 1038 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 NOP2P46087 812 aaKnown RBP4.54□□□□□ -1.68
MCF2-210ENST00000536274 RBM6P78332 1123 aaKnown RBP4.54□□□□□ -1.68
MCF2-210ENST00000536274 PDE3BQ13370 1112 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 IDI1Q13907 227 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 RALBP1Q15311 655 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 KCNV2Q8TDN2 545 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 GTF3C6Q969F1 213 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 LMBRD1Q9NUN5 540 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 BCCIPQ9P287 314 aaKnown RBP eCLIP4.54□□□□□ -1.68
MCF2-210ENST00000536274 KIAA1210Q9ULL0 1709 aa4.54□□□□□ -1.68
MCF2-210ENST00000536274 CCDC66A2RUB6 948 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 RLBP1P12271 317 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 NEUROD2Q15784 382 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 SKOR2Q2VWA4 1001 aaPredicted RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 PROSER2Q86WR7 435 aaPredicted RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 EFCAB3Q8N7B9 438 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 ANKRD7Q92527 254 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 RTF1Q92541 710 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 STK24Q9Y6E0 443 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 COL24A1Q17RW2 1714 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 USP54Q70EL1 1684 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 GLI3P10071 1580 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 EIF3AQ14152 1382 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 QSER1Q2KHR3 1735 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 HMGN5P82970 282 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 SLC20A2Q08357 652 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 CDCA8Q53HL2 280 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 FNBP4Q8N3X1 1017 aaPredicted RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 PRPF38AQ8NAV1 312 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 MPHOSPH9Q99550 1183 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 GDPD2Q9HCC8 539 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 ZNF446Q9NWS9 450 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 BLMP54132 1417 aaPredicted RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 SPATA31E1Q6ZUB1 1445 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 VIRMAQ69YN4 1812 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 WNK3Q9BYP7 1800 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 ST20-MTHFSA0A0A6YYL1 179 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 HS1BP3Q53T59 392 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 SYT10Q6XYQ8 523 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 LRRC59Q96AG4 307 aaKnown RBP4.53□□□□□ -1.68
MCF2-210ENST00000536274 NGLY1Q96IV0 654 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 CARD10Q9BWT7 1032 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 CCDC144AA2RUR9 1427 aa4.53□□□□□ -1.68
MCF2-210ENST00000536274 USP47Q96K76 1375 aa4.52□□□□□ -1.69
MCF2-210ENST00000536274 POLR3GO15318 223 aaPredicted RBP4.52□□□□□ -1.69
MCF2-210ENST00000536274 RXRBP28702 533 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms