RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 TEX13AQ9BXU3 409 aaPredicted RBP32.4■■■□□ 2.78
USP48-214ENST00000532737 YY1P25490 414 aa32.39■■■□□ 2.78
USP48-214ENST00000532737 STARD3NLO95772 234 aa32.38■■■□□ 2.77
USP48-214ENST00000532737 COL23A1Q86Y22 540 aaPredicted RBP32.38■■■□□ 2.77
USP48-214ENST00000532737 SGIP1Q9BQI5 828 aa32.38■■■□□ 2.77
USP48-214ENST00000532737 IFT57Q9NWB7 429 aa32.38■■■□□ 2.77
USP48-214ENST00000532737 USP16Q9Y5T5 823 aa32.38■■■□□ 2.77
USP48-214ENST00000532737 TUBGCP6Q96RT7 1819 aa32.37■■■□□ 2.77
USP48-214ENST00000532737 NGEFQ8N5V2 710 aa32.37■■■□□ 2.77
USP48-214ENST00000532737 MTFR1LQ9H019 292 aa32.37■■■□□ 2.77
USP48-214ENST00000532737 CCDC87Q9NVE4 849 aa32.37■■■□□ 2.77
USP48-214ENST00000532737 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.36■■■□□ 2.77
USP48-214ENST00000532737 RPS6KA4O75676 772 aa32.36■■■□□ 2.77
USP48-214ENST00000532737 PHF14O94880 888 aa32.36■■■□□ 2.77
USP48-214ENST00000532737 GNAI1P63096 354 aa32.36■■■□□ 2.77
USP48-214ENST00000532737 GIGYF1O75420 1035 aaPredicted RBP32.35■■■□□ 2.77
USP48-214ENST00000532737 MBIPQ9NS73 344 aa32.35■■■□□ 2.77
USP48-214ENST00000532737 RTCBQ9Y3I0 505 aaKnown RBP32.35■■■□□ 2.77
USP48-214ENST00000532737 MYH14Q7Z406 1995 aaKnown RBP32.35■■■□□ 2.77
USP48-214ENST00000532737 SSFA2P28290 1259 aa32.34■■■□□ 2.77
USP48-214ENST00000532737 FLAD1Q8NFF5 587 aa32.34■■■□□ 2.77
USP48-214ENST00000532737 DCAF8L1A6NGE4 600 aa32.33■■■□□ 2.77
USP48-214ENST00000532737 COL24A1Q17RW2 1714 aa32.32■■■□□ 2.76
USP48-214ENST00000532737 WDR63Q8IWG1 891 aa32.32■■■□□ 2.76
USP48-214ENST00000532737 ZBTB1Q9Y2K1 713 aa32.32■■■□□ 2.76
USP48-214ENST00000532737 UBR3Q6ZT12 1888 aa32.31■■■□□ 2.76
USP48-214ENST00000532737 IL16Q14005 1332 aa32.31■■■□□ 2.76
USP48-214ENST00000532737 MSH5O43196 834 aa32.31■■■□□ 2.76
USP48-214ENST00000532737 A1BGP04217 495 aa32.31■■■□□ 2.76
USP48-214ENST00000532737 KRT24Q2M2I5 525 aa32.31■■■□□ 2.76
USP48-214ENST00000532737 CANXP27824 592 aaKnown RBP32.29■■■□□ 2.76
USP48-214ENST00000532737 TRAPPC3LQ5T215 181 aa32.29■■■□□ 2.76
USP48-214ENST00000532737 FHDC1Q9C0D6 1143 aaPredicted RBP32.29■■■□□ 2.76
USP48-214ENST00000532737 ZNF521Q96K83 1311 aa32.28■■■□□ 2.76
USP48-214ENST00000532737 ARHGEF1Q92888 912 aaKnown RBP32.28■■■□□ 2.76
USP48-214ENST00000532737 SOS1Q07889 1333 aaPredicted RBP32.27■■■□□ 2.76
USP48-214ENST00000532737 ADRA2BP18089 450 aa32.27■■■□□ 2.76
USP48-214ENST00000532737 SYT17Q9BSW7 474 aa32.27■■■□□ 2.76
USP48-214ENST00000532737 SLC16A10Q8TF71 515 aa32.26■■■□□ 2.75
USP48-214ENST00000532737 TSR2Q969E8 191 aaKnown RBP32.26■■■□□ 2.75
USP48-214ENST00000532737 CHD4Q14839 1912 aa32.26■■■□□ 2.75
USP48-214ENST00000532737 PIP4K2AP48426 406 aaPredicted RBP32.25■■■□□ 2.75
USP48-214ENST00000532737 SPINK5Q9NQ38 1064 aaPredicted RBP32.25■■■□□ 2.75
USP48-214ENST00000532737 NBPF26B4DH59 902 aa32.23■■■□□ 2.75
USP48-214ENST00000532737 EIF5P55010 431 aaKnown RBP32.23■■■□□ 2.75
USP48-214ENST00000532737 NBPF10Q6P3W6 841 aaKnown RBP32.23■■■□□ 2.75
USP48-214ENST00000532737 NBPF15Q8N660 670 aa32.23■■■□□ 2.75
USP48-214ENST00000532737 RFC4P35249 363 aa32.21■■■□□ 2.75
USP48-214ENST00000532737 IL6STP40189 918 aaPredicted RBP32.21■■■□□ 2.75
USP48-214ENST00000532737 ARXQ96QS3 562 aa32.21■■■□□ 2.75
USP48-214ENST00000532737 EIF2S2P20042 333 aaKnown RBP32.2■■■□□ 2.75
USP48-214ENST00000532737 DUSP27Q5VZP5 1158 aa32.2■■■□□ 2.75
USP48-214ENST00000532737 C8orf58Q8NAV2 365 aa32.2■■■□□ 2.75
USP48-214ENST00000532737 COL15A1P39059 1388 aa32.19■■■□□ 2.74
USP48-214ENST00000532737 ELL2O00472 640 aaPredicted RBP32.18■■■□□ 2.74
USP48-214ENST00000532737 MSL1Q68DK7 614 aa32.18■■■□□ 2.74
USP48-214ENST00000532737 SRP68Q9UHB9 627 aaKnown RBP32.18■■■□□ 2.74
USP48-214ENST00000532737 ZNF330Q9Y3S2 320 aaPredicted RBP32.18■■■□□ 2.74
USP48-214ENST00000532737 FANCIQ9NVI1 1328 aa32.18■■■□□ 2.74
USP48-214ENST00000532737 UTRNP46939 3433 aa32.17■■■□□ 2.74
USP48-214ENST00000532737 LAMB4A4D0S4 1761 aa32.17■■■□□ 2.74
USP48-214ENST00000532737 HOXB7P09629 217 aa32.17■■■□□ 2.74
USP48-214ENST00000532737 NECTIN2Q92692 538 aa32.17■■■□□ 2.74
USP48-214ENST00000532737 GOLGA2Q08379 1002 aa32.15■■■□□ 2.74
USP48-214ENST00000532737 TSPYL6Q8N831 410 aa32.15■■■□□ 2.74
USP48-214ENST00000532737 USP42Q9H9J4 1324 aaKnown RBP32.15■■■□□ 2.74
USP48-214ENST00000532737 A0A087WZG4 1122 aa32.14■■■□□ 2.74
USP48-214ENST00000532737 GYS1P13807 737 aa32.14■■■□□ 2.74
USP48-214ENST00000532737 PDIA6Q15084 440 aa32.14■■■□□ 2.74
USP48-214ENST00000532737 MYH16Q9H6N6 1097 aa32.14■■■□□ 2.74
USP48-214ENST00000532737 ERBB4Q15303 1308 aa32.13■■■□□ 2.73
USP48-214ENST00000532737 NARFQ9UHQ1 456 aa32.13■■■□□ 2.73
USP48-214ENST00000532737 TBC1D2BQ9UPU7 963 aa32.13■■■□□ 2.73
USP48-214ENST00000532737 MYL6BP14649 208 aa32.12■■■□□ 2.73
USP48-214ENST00000532737 HNRNPUQ00839 825 aaKnown RBP eCLIP32.12■■■□□ 2.73
USP48-214ENST00000532737 HDGFL1Q5TGJ6 251 aa32.12■■■□□ 2.73
USP48-214ENST00000532737 USPL1Q5W0Q7 1092 aa32.12■■■□□ 2.73
USP48-214ENST00000532737 ZPR1O75312 459 aa32.11■■■□□ 2.73
USP48-214ENST00000532737 NPM2Q86SE8 214 aaKnown RBP32.11■■■□□ 2.73
USP48-214ENST00000532737 C4AP0C0L4 1744 aa32.11■■■□□ 2.73
USP48-214ENST00000532737 PROSER3Q2NL68 480 aa32.1■■■□□ 2.73
USP48-214ENST00000532737 CDCA7LQ96GN5 454 aa32.1■■■□□ 2.73
USP48-214ENST00000532737 ANXA1P04083 346 aa32.09■■■□□ 2.73
USP48-214ENST00000532737 EXOSC9Q06265 439 aaKnown RBP32.09■■■□□ 2.73
USP48-214ENST00000532737 LRP10Q7Z4F1 713 aa32.09■■■□□ 2.73
USP48-214ENST00000532737 E9PSI1 815 aa32.08■■■□□ 2.73
USP48-214ENST00000532737 SLFN5Q08AF3 891 aa32.08■■■□□ 2.73
USP48-214ENST00000532737 FKBP8Q14318 412 aa32.08■■■□□ 2.73
USP48-214ENST00000532737 DZIP3Q86Y13 1208 aaKnown RBP32.08■■■□□ 2.73
USP48-214ENST00000532737 NLGN1Q8N2Q7 840 aa32.08■■■□□ 2.73
USP48-214ENST00000532737 BCL2L12Q9HB09 334 aa32.08■■■□□ 2.73
USP48-214ENST00000532737 TWISTNBQ3B726 338 aaPredicted RBP32.07■■■□□ 2.72
USP48-214ENST00000532737 DDX21Q9NR30 783 aaKnown RBP eCLIP32.07■■■□□ 2.72
USP48-214ENST00000532737 CHPF2Q9P2E5 772 aa32.07■■■□□ 2.72
USP48-214ENST00000532737 CAMTA2O94983 1202 aa32.06■■■□□ 2.72
USP48-214ENST00000532737 POLD1P28340 1107 aa32.06■■■□□ 2.72
USP48-214ENST00000532737 TTLL7Q6ZT98 887 aa32.04■■■□□ 2.72
USP48-214ENST00000532737 DBF4Q9UBU7 674 aaPredicted RBP32.03■■■□□ 2.72
USP48-214ENST00000532737 MMP10P09238 476 aa32.02■■■□□ 2.72
USP48-214ENST00000532737 ZNF784Q8NCA9 323 aaPredicted RBP32.02■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms