RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 ZFYVE9O95405 1425 aa12.78□□□□□ -0.36
CPNE4-209ENST00000512055 ZFYVE27Q5T4F4 411 aa12.78□□□□□ -0.36
CPNE4-209ENST00000512055 KDM2BQ8NHM5 1336 aa12.78□□□□□ -0.36
CPNE4-209ENST00000512055 CHRNA2Q15822 529 aa12.77□□□□□ -0.36
CPNE4-209ENST00000512055 PDCL2Q8N4E4 241 aa12.77□□□□□ -0.36
CPNE4-209ENST00000512055 LRRC59Q96AG4 307 aaKnown RBP12.77□□□□□ -0.36
CPNE4-209ENST00000512055 KDM5AP29375 1690 aaKnown RBP12.77□□□□□ -0.37
CPNE4-209ENST00000512055 PSMA5P28066 241 aa12.77□□□□□ -0.37
CPNE4-209ENST00000512055 ANKRD24Q8TF21 1146 aa12.77□□□□□ -0.37
CPNE4-209ENST00000512055 TRDNQ13061 729 aa12.77□□□□□ -0.37
CPNE4-209ENST00000512055 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.37
CPNE4-209ENST00000512055 DBF4Q9UBU7 674 aaPredicted RBP12.76□□□□□ -0.37
CPNE4-209ENST00000512055 ZFYVE16Q7Z3T8 1539 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 CCDC102AQ96A19 550 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 TRIM5Q9C035 493 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 SBNO2Q9Y2G9 1366 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 KIF6Q6ZMV9 814 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 MYD88Q99836 296 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 FIBPO43427 364 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 SSR1P43307 286 aaKnown RBP12.76□□□□□ -0.37
CPNE4-209ENST00000512055 STK3Q13188 491 aa12.76□□□□□ -0.37
CPNE4-209ENST00000512055 VPS37DQ86XT2 251 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 INSRP06213 1382 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 MPNDQ8N594 471 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 CWC22Q9HCG8 908 aaKnown RBP12.75□□□□□ -0.37
CPNE4-209ENST00000512055 CYP46A1Q9Y6A2 500 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 HIP1O00291 1037 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 OFD1O75665 1012 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 PPP1R42Q7Z4L9 355 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 FLT4P35916 1363 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 EZRP15311 586 aaKnown RBP12.75□□□□□ -0.37
CPNE4-209ENST00000512055 MAP3K2Q9Y2U5 619 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 KDM4AO75164 1064 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 SEPT7Q16181 437 aaKnown RBP12.75□□□□□ -0.37
CPNE4-209ENST00000512055 TTC22Q5TAA0 569 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 CHPF2Q9P2E5 772 aa12.75□□□□□ -0.37
CPNE4-209ENST00000512055 RALYLQ86SE5 291 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 JAKMIP1Q96N16 626 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 CCDC8Q9H0W5 538 aaPredicted RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 CPLX2Q6PUV4 134 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 ANKRD44Q8N8A2 993 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 CIZ1Q9ULV3 898 aaPredicted RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 EDC4Q6P2E9 1401 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 ERLIN1O75477 346 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 LTKP29376 864 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 SYNE3Q6ZMZ3 975 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 CCDC47Q96A33 483 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 BOLA2Q9H3K6 86 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 MNAT1P51948 309 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 LARP1Q6PKG0 1096 aaKnown RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 NFXL1Q6ZNB6 911 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 SMC5Q8IY18 1101 aa12.74□□□□□ -0.37
CPNE4-209ENST00000512055 JARID2Q92833 1246 aaPredicted RBP12.74□□□□□ -0.37
CPNE4-209ENST00000512055 RAB11FIP3O75154 756 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 SDSP20132 328 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 TBX22Q9Y458 520 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 CDC42BPBQ9Y5S2 1711 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 NUTM2BA6NNL0 878 aaPredicted RBP12.73□□□□□ -0.37
CPNE4-209ENST00000512055 NUTM2EB1AL46 878 aaPredicted RBP12.73□□□□□ -0.37
CPNE4-209ENST00000512055 ZBTB7BO15156 539 aaPredicted RBP12.73□□□□□ -0.37
CPNE4-209ENST00000512055 GLRX3O76003 335 aaKnown RBP12.73□□□□□ -0.37
CPNE4-209ENST00000512055 NUTM2AQ8IVF1 878 aaPredicted RBP12.73□□□□□ -0.37
CPNE4-209ENST00000512055 CNNM1Q9NRU3 951 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 MLH3Q9UHC1 1453 aa12.73□□□□□ -0.37
CPNE4-209ENST00000512055 G3V3G9 751 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 FKBP4Q02790 459 aaKnown RBP eCLIP12.72□□□□□ -0.37
CPNE4-209ENST00000512055 DCAF8Q5TAQ9 597 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 SPC24Q8NBT2 197 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 IQGAP3Q86VI3 1631 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 SLC39A6Q13433 755 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 LARP6Q9BRS8 491 aaKnown RBP12.72□□□□□ -0.37
CPNE4-209ENST00000512055 HOOK1Q9UJC3 728 aaKnown RBP12.72□□□□□ -0.37
CPNE4-209ENST00000512055 MYOM2P54296 1465 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 PLXNC1O60486 1568 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 SSFA2P28290 1259 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 TDO2P48775 406 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 G2E3Q7L622 706 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 CHMP4CQ96CF2 233 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 PIK3R4Q99570 1358 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 CCDC57Q2TAC2 916 aa12.72□□□□□ -0.37
CPNE4-209ENST00000512055 CASTP20810 708 aaKnown RBP12.71□□□□□ -0.37
CPNE4-209ENST00000512055 HOXC9P31274 260 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 CABLES1Q8TDN4 633 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 AKAP17AQ02040 695 aaKnown RBP12.71□□□□□ -0.37
CPNE4-209ENST00000512055 CEP63Q96MT8 703 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 ZNF521Q96K83 1311 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 CROCC2H7BZ55 1655 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 SHTN1A0MZ66 631 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 TMCO5BA8MYB1 307 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 TTC39AQ5SRH9 613 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 TNPO1Q92973 898 aaKnown RBP12.71□□□□□ -0.37
CPNE4-209ENST00000512055 HYPKQ9NX55 129 aa12.71□□□□□ -0.37
CPNE4-209ENST00000512055 ATP5J2-PTCD1G3V325 749 aa12.71□□□□□ -0.38
CPNE4-209ENST00000512055 GTF2F1P35269 517 aaKnown RBP eCLIP12.71□□□□□ -0.38
CPNE4-209ENST00000512055 CCDC158Q5M9N0 1113 aa12.71□□□□□ -0.38
CPNE4-209ENST00000512055 CCDC73Q6ZRK6 1079 aa12.71□□□□□ -0.38
CPNE4-209ENST00000512055 SYNMO15061 1565 aa12.71□□□□□ -0.38
CPNE4-209ENST00000512055 MBD3O95983 291 aa12.71□□□□□ -0.38
CPNE4-209ENST00000512055 PRPF40BQ6NWY9 871 aaKnown RBP12.71□□□□□ -0.38
CPNE4-209ENST00000512055 PDRG1Q9NUG6 133 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 249.5 ms