RNA–Protein interactions for RNA: ENST00000477243.1

HMGN4-202, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

TSL 3

Gene HMGN4, Length 113 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-202ENST00000477243 ECM1Q16610 540 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 TSHZ1Q6ZSZ6 1077 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 CKAP2LQ8IYA6 745 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 PNISRQ8TF01 805 aaKnown RBP3.81□□□□□ -1.8
HMGN4-202ENST00000477243 CDCA7LQ96GN5 454 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 JPH4Q96JJ6 628 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 PRKD2Q9BZL6 878 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 DDX56Q9NY93 547 aaKnown RBP3.81□□□□□ -1.8
HMGN4-202ENST00000477243 NOD1Q9Y239 953 aa3.81□□□□□ -1.8
HMGN4-202ENST00000477243 MRPL42Q9Y6G3 142 aaKnown RBP3.81□□□□□ -1.8
HMGN4-202ENST00000477243 FLNBO75369 2602 aaKnown RBP3.81□□□□□ -1.8
HMGN4-202ENST00000477243 CFAP99D6REC4 459 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 C6orf229H3BNL8 230 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 PRC1O43663 620 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 FBXO45P0C2W1 286 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 PRKAR2AP13861 404 aaKnown RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 SCNN1AP37088 669 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 FMR1Q06787 632 aaKnown RBP eCLIP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 OS9Q13438 667 aaPredicted RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 OCLNQ16625 522 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 ZFYVE27Q5T4F4 411 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 TMC7Q7Z402 723 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 JAZF1Q86VZ6 243 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 GPATCH11Q8N954 259 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 PRPF38AQ8NAV1 312 aaKnown RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 PLPP7Q8NBV4 271 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 TMC1Q8TDI8 760 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 RELTQ969Z4 430 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 DMRTB1Q96MA1 342 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 DUSP9Q99956 384 aaKnown RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 BSDC1Q9NW68 430 aaPredicted RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 CEP126Q9P2H0 1117 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 DMGDHQ9UI17 866 aaKnown RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 PCDHGC3Q9UN70 934 aa3.8□□□□□ -1.8
HMGN4-202ENST00000477243 FASNP49327 2511 aaKnown RBP3.8□□□□□ -1.8
HMGN4-202ENST00000477243 CAMTA1Q9Y6Y1 1673 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 A0A0U1RQG5 324 aaPredicted RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 TTLL13PA6NNM8 815 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 K7ELQ4 463 aaPredicted RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 KRT37O76014 449 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 HSP90AA1P07900 732 aaKnown RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 NPR3P17342 541 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 TNNI2P48788 182 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 FAM50AQ14320 339 aaKnown RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 PLEKHG4Q58EX7 1191 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 FMNL3Q8IVF7 1028 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 SIX5Q8N196 739 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 FAM174AQ8TBP5 190 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 ZNF594Q96JF6 807 aaPredicted RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 PRIMPOLQ96LW4 560 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 RPS6KC1Q96S38 1066 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 CEP89Q96ST8 783 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 MAF1Q9H063 256 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 TMEM134Q9H6X4 195 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 CYLDQ9NQC7 956 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 GABBR1Q9UBS5 961 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 DDX41Q9UJV9 622 aaKnown RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 G3BP2Q9UN86 482 aaKnown RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 DNMT3AQ9Y6K1 912 aaPredicted RBP3.79□□□□□ -1.8
HMGN4-202ENST00000477243 KIAA0556O60303 1618 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 MAPKBP1O60336 1514 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 PTPN13Q12923 2485 aa3.79□□□□□ -1.8
HMGN4-202ENST00000477243 NWD1Q149M9 1564 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 PDGFRBP09619 1106 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 MAPK8P45983 427 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 TBX4P57082 545 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 C4orf46Q504U0 113 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 ARSHQ5FYA8 562 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 ALG1LQ6GMV1 187 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 DESI1Q6ICB0 168 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 CCSAPQ6IQ19 270 aaPredicted RBP3.78□□□□□ -1.8
HMGN4-202ENST00000477243 MCF2L2Q86YR7 1114 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 NME8Q8N427 588 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 PDCD7Q8N8D1 485 aaKnown RBP3.78□□□□□ -1.8
HMGN4-202ENST00000477243 ZDHHC16Q969W1 377 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 C8orf48Q96LL4 319 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 FAM161BQ96MY7 647 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 OCEL1Q9H607 264 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 TCEAL9Q9UHQ7 104 aa3.78□□□□□ -1.8
HMGN4-202ENST00000477243 ZNF608Q9ULD9 1512 aaPredicted RBP3.78□□□□□ -1.8
HMGN4-202ENST00000477243 PREX1Q8TCU6 1659 aa3.78□□□□□ -1.81
HMGN4-202ENST00000477243 ZNF318Q5VUA4 2279 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 KIF3BO15066 747 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 PLIN1O60240 522 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 PPFIA4O75335 1185 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 RHBDL3P58872 404 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 CHMP4BP1P59074 171 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 CLDN10P78369 228 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 EHHADHQ08426 723 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 HDAC1Q13547 482 aaPredicted RBP3.77□□□□□ -1.81
HMGN4-202ENST00000477243 DSC3Q14574 896 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 RNF20Q5VTR2 975 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 ALKBH2Q6NS38 261 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 RPUSD2Q8IZ73 545 aaKnown RBP3.77□□□□□ -1.81
HMGN4-202ENST00000477243 TMTC2Q8N394 836 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 PHTF2Q8N3S3 785 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 HELQQ8TDG4 1101 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 JDP2Q8WYK2 163 aa3.77□□□□□ -1.81
HMGN4-202ENST00000477243 SCYL1Q96KG9 808 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms